RNA id: TU108474


Basic Information

Item Value
RNA id TU108474
length 1983
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G73308
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 25945401 ~ 25965894 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATAAGACGTTATGTTTATGATTAGGGTGACGTTgcaataatataacattttgcaaTATCAAAAAGCATCTGTTTTTGTACTGATCAAATAACTGGAAGCGAAGGTAGGATAGTATTACTTCATGATTATGTATTCAAATAATGCTCTTTAACAGGAAACAAATATGTCAAGGTGCTTGCTTATGATTTATTGCTTAATAACAGATGCTGGGAGAGTCCTCAGATCAactttaactattattattcaaCTATTCAACTATTATTATTCCACACGTTTCAAGAATTGCACATTACTCCTTATTCAATAAACGCATCACCTAATAAAACggtactaataatattaatatgcacaCAAATGTAGACGTTTAAACCAAAACATGGTCCAAAACACCCTTTTTAATTCaaaagtcaatttaaaaaattttattcaaattaagtagatttaaatattacattttaacactaATGCGCAAATGCATAGCATTATATGCATGTCTCATCATTAAAAGTCCAACTAACGCCCAAGCGACAGAATAAAGATGTCTtgcgtgcatttatttatttatttggtaagtaGCGGTAAATAGAGCTGTTCAGTCATGACATTAATTTGTAGACTGACCTGGATAAGTCATCCCGTCTTCCTTAGGGAATTTCCTATGGGTTTTCGGCACAGCCTTTCAAATTAAAGCCGCTAAATAAGAACTACAACAGTTTTCAGATTCGCCAAGCACGCAATATCACATTCTTCTAAGCTGTAGTCCGCATTTAGATACTCGTTagcatgacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacaacataaGTGGCTTCAGGATTCACATATGgaagtgtattatttatgttGCAAAACCTGAAAACGATTATTAAGCACAGATCTTATTTTGCTCATGAACTAAAAACCCACGGGAAGCTCCAGAGGGAAGACGAGATGCTGAAAAATGCTGCTGAACAGGCTCTATAAGAGAGATGACATACAGTAAAGCTGCTCATTATCCCCAAATAAACCCCGCTTTGTGTTGCCGAACCGCCCAATCAAGTGTTTATTTCGCGATAATGACCAGCTAGCCGTACATTATCccttaaatcaatatttttaggTAATCTTTTCTCCGGCGGATGAGCAAAAACGTCGCAAGAGTCCCCCATGTGCAGCGCCAGTCTGCCAGCgtgaaaaacaacaagaaaactAGTTCCTCTTCTTCACACCGGCTCAtctatgcagtgtgtgtgtgtgtgtgtgagagagagaggtcctCGCTGCACACATGTGCGCCACTACACGCATTTCTGCTCAACGCGTCGTCATTGGAATTAGTGAAAATGATTACGTTTGTTTACAAGGCTGCTAattatccacacacacacacacacacacacacacacacacacactcacacacacaataatttttaacaataacatCTGATTTTCTGCTAGcgagaaaacctttttttttgttgcttgcATTTTATAGTTATAATGTGAttgtatgaaaacaaaatgagagATTGTTTCTGTATTTAAGGTACCCGAGCATCTAATTCAGACTCGTTCGTTTCCTATTCCTCCAGTCATCTCCGTGCTTCTTCGCCCGGCCTTAAAACAGGCCTAATAGCAACCAGGCCACAACATAACGCATTACAAATCACAAGATAATTGTGCATGTAATCACAAATTGAGCTTATATCGGATGCCGAGTGTAGAAACAAAGTTTTAATTAACCCGAAATACCTGTGCAGAAGTGCTTTCGTAAACCAGATGGTGTTTATCGTTGAAATAATTATCCAAGATTATTCTCATTCTGAACAGATTCCCCTCATACAGGTGGCAGGCATTAAAATTAAGTGATCAAATTAAAGCAATTAAGAGTTATTACTTCCACAACACTTCAATGGAACATTTAccagctgagagcaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108534 lncRNA downstream 82989 25860328 ~ 25862412 (-) True G73351
TU108535 lncRNA downstream 83127 25860328 ~ 25862274 (-) False G73351
TU108533 lncRNA downstream 98605 25834317 ~ 25846796 (-) True G73350
XR_006251714.1 lncRNA downstream 195012 25744021 ~ 25750389 (-) True LOC122351247
TU108468 lncRNA downstream 468463 25472266 ~ 25476938 (-) True G73305
TU108574 lncRNA upstream 78270 26044164 ~ 26045413 (-) True G73379
TU108588 lncRNA upstream 88973 26054867 ~ 26062832 (-) True G73385
TU108585 lncRNA upstream 90597 26056491 ~ 26061118 (-) False G73385
TU108631 lncRNA upstream 141001 26106895 ~ 26107406 (-) False LOC122351579
TU108650 lncRNA upstream 306793 26272687 ~ 26274866 (-) False fign
XM_043249521.1 mRNA downstream 25705 25862753 ~ 25919696 (-) True LOC122352035
XM_043249028.1 mRNA downstream 92098 25830978 ~ 25853303 (-) True LOC122351758
XM_043249181.1 mRNA downstream 482552 25459895 ~ 25462849 (-) True LOC122351834
XM_043248249.1 mRNA downstream 1137620 24803623 ~ 24807781 (-) True gpbar1
XM_043249720.1 mRNA downstream 1148347 24789506 ~ 24797054 (-) True zgc:92380
XM_043249390.1 mRNA upstream 99318 26065212 ~ 26067013 (-) True gcgb
XM_043248248.1 mRNA upstream 102344 26068238 ~ 26080787 (-) True LOC122351282
XM_043248740.1 mRNA upstream 116254 26082148 ~ 26104816 (-) False ifih1
XM_043248739.1 mRNA upstream 116254 26082148 ~ 26104816 (-) True ifih1
XM_043248741.1 mRNA upstream 140763 26106657 ~ 26187631 (-) True LOC122351579
TU108498 other downstream 92107 25847817 ~ 25853294 (-) False LOC122351758
TU108525 other downstream 113045 25794083 ~ 25832356 (-) False LOC122351758
TU108526 other downstream 126190 25794083 ~ 25819211 (-) False LOC122351758
TU108524 other downstream 152345 25790517 ~ 25793056 (-) True G73347
TU108462 other downstream 486659 25456414 ~ 25458742 (-) True G73300

Expression Profile