RNA id: TU98627


Basic Information

Item Value
RNA id TU98627
length 2159
RNA type TUCP
GC content 0.46
exon number 2
gene id G66657
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 459574 ~ 462029 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGATCCAAAACGCCACATCCGCTTCTGTAGCAGCCGCCTGTATAGCACAAATATCTATGTCAGGTAACATATTACTAGTCATAACAGATGTCGaaacagcagagacagacaacCATGATGGCATCAATCCAGATGCTGCAGCAGTTTTGGCTGCATGGTCagctaaagtgttacctctAGCCTCAAGGGTATCAAGGACAGAATGGCCCTTAGTTTTGATGATGGACAACAAACTAGGAAGACGACAGGCCTGTATTAAGTCTTCGTATGGTACACAGGACACGAGGCCAACATCATCCTTGTGTAAGGCCCATTATACATAGACCCCAAAGAAGACAACGTAGCCCCAGTATCCAACAGAAAGGGGTACGTTTGCCCATTCACATGTAACTCAATGAGTGGCAAGTCACGCCCTGTGGgggaagcaaaacaaagagataaaAGTGCGGAATTTACAACTTCAGTGGGGTCAGAACTCTGTGGGCTGCCCTATTCTTGAGGACGGTAGACAGGCTGCTGCGCGTGCCCCTAGGTTGGTAAGGAACCTGAGGCTGTTGCTGCTGACTGCTAGGCTGTGCATACATCTGCGCATACATCTGTGGGGACCCTCTCGGGTGCTGGGGTTGCCCCGCCCTTGCCTGCTCATCGGCCCTGCGCTTGTTACATTCTCTAGCCCAATGCCCAGGCTTGTTACAATAATTACACCTTCCTGGCTTCCTGCCCTTCTTAAATCCTCCTTGTGTACCTGGTGCATAGCCACCagctacagacacacatacaacgTTGCGTTTTCCTACCTCAGGGAACATACCATCACTCTCTAAAGTTCTGATTTTGACCCCCGCATCTTTAACCTTCAGGTTATGTCTGTCACACAGATGGTACTTCAGAACATCCTTGTGGGTTGGAAGGCAGTTGGACATAAAGGTAGATATGAACATCGGGTTGGGCTCATTAATGTCCAGCTCCAGTCCGCCCACAACCTTCCACACGTCCGAAAAACGGGTGAAAAAACATGCAACAGTCTCATCCTTGCCCTGTTTACAGTTAGTGACTTGTGACAGATCACGGTTGGAAGATTTCAAATCCAAAAGatacttttttaattgtacactcAGTTGGCTCATCATTTCTTCCGGATCATCACGCCATGCAAATTCAATAACTGTCCTTTTCCTGCTGGTCTTTCCTTCCCCGATTCCTTCTGTTAAATCCTCGCGCTTAACTACGTCAAATTTCGGTGCGAGAACAGGTACTGCCTTAATTACAGCGTTCTCATCGTAGGCTGCGCCTAATTTGCTATGCAGAATGAATCTATAATCAGCCCCAACTAATTGACAGTGGCGCGAGCATCTGATTAACATAAGGCGGCGGTTTCTCGTCACACGGTTTAGACATTGTCAATGGTTtgtctttatcatttttctttggttttggtaCAGTTTTCAAAACTGCTTTTGGAACATACGCATTCGTCTTTTCCCTCCAAACCTCTGCCATTTTATACCACACGTCATATCCTCCTCTCATATAATTGTAATCCCAATCAGGGTCGCCCTCACCTCCATATACTAAATTGTAAACTGTTTTCATATGACTTGGGTCGAAAGTGCCCTCACGCGGATAATCTCGCCACTGGGTACCCGCTGTCCATCCCGCCAAATTATCAAGATATGGAACCGTGTAGTATCCCCAACCACAACGTTCCATCCATGCTTTGGGTGTTTCAGAGGGTTCAGGTTTAGGATATGTTTGTCCCATTCTGACCACTGATGACGTACTATAACAAGTCAATCTAGTCTGAATTTAATCAAACACGATACAATTGACTTACGCGGATACATCTACTCAGGTAGTGAAACTATACTTTCTCTTACCTGGTCAGATGTATCCCGGACGAACCCCAGAactgtaagaacttctcttcttcagtgtatgcgtcccctgtgtccgttcatcagcagtacagaacaaattcaggcgcctggaagcagcagtcgaaacaaaccacacgagtgaaatcaaatctggtttattcagaatgcagcttaacacagagagtaaaccatcagcttatatagcccttatggggcgttgacctctattgcatagctggacatgcctcaactgcccactacggagagcacaaaagacaac

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98638 lncRNA upstream 42565 351696 ~ 417009 (+) True G66658
TU98662 lncRNA downstream 51220 513249 ~ 513637 (+) True G66672
TU98670 lncRNA downstream 88078 550107 ~ 556547 (+) True G66676
TU98691 lncRNA downstream 99668 561697 ~ 564622 (+) True G66686
TU98696 lncRNA downstream 121478 583507 ~ 601810 (+) True G66690
TU98708 lncRNA downstream 215154 677183 ~ 678359 (+) True G66702
XM_043248466.1 mRNA upstream 79550 378075 ~ 380024 (+) True LOC122351407
XM_043248464.1 mRNA upstream 319899 47876 ~ 139675 (+) True LOC122351404
XM_043248517.1 mRNA downstream 343115 805144 ~ 822378 (+) True LOC122351437
XM_043248872.1 mRNA downstream 397747 859776 ~ 899379 (+) True LOC122351650
XM_043248885.1 mRNA downstream 437601 899630 ~ 907921 (+) True LOC122351660
XM_043248871.1 mRNA downstream 448002 910031 ~ 933338 (+) True LOC122351648
XM_043248879.1 mRNA downstream 586385 1048414 ~ 1058016 (+) True LOC122351656
TU98754 other downstream 335104 797133 ~ 805009 (+) True G66727
TU98782 other downstream 396651 858680 ~ 860156 (+) False LOC122351650
TU98836 other downstream 665497 1127526 ~ 1134989 (+) True G66795
XR_006251792.1 other downstream 1251784 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 2732766 3194795 ~ 3196521 (+) False LOC122351419

Expression Profile