RNA id: TU98987


Basic Information

Item Value
RNA id TU98987
length 446
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC122351665
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1259579 ~ 1279178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGACGTTGGGAAAGCAGTCTTGACAACTTCCTTAAACGTTTGTTCAAGTACATAATGTATTTAACTTAAGTTTTGTGCGCTTTCGTTGACAAAAATAGGATATAACATCACGGATTTACAGATCTTGTCAGTCACCATGGTGTAGGGGTGACTTATGAATTGTGAATTTTTGAAGAACCCATCCAATAAAGtgtgaGGTTGCTACTATTTGTGACTTATGATCAACAGTCAAGATGAGGACAACAGGGCAGCTTCTCTTCATGTCTTTCTACTTTACAGTGCTTCAGACAATCCCTGCTCCTGTCAACTTTACAATATTGTCACACAATTTCAAGCACATTTTGCAGTGGAGCCCTGGAATAAATTCTCCTCCAGGGACTGTTTTCAGTGTGAATCAAAGTTCAACTCTTCACCAGAACCAAAGCCCTTTAACAAGACAGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98965 lncRNA upstream 30175 1229232 ~ 1229442 (+) True G66891
TU98807 lncRNA upstream 243310 991461 ~ 1016307 (+) True G66767
TU98772 lncRNA upstream 256053 984459 ~ 1003564 (+) True G66744
TU98800 lncRNA upstream 287109 972179 ~ 972508 (+) True G66765
TU98798 lncRNA upstream 291476 967745 ~ 968141 (+) False G66763
TU99030 lncRNA downstream 250141 1525863 ~ 1527400 (+) True G66931
TU99052 lncRNA downstream 310213 1585935 ~ 1594452 (+) True G66952
XR_006251746.1 lncRNA downstream 395649 1671371 ~ 1674598 (+) True LOC122351376
TU99157 lncRNA downstream 412933 1688655 ~ 1692476 (+) False G67023
TU99158 lncRNA downstream 412933 1688655 ~ 1692476 (+) True G67023
XM_043248881.1 mRNA upstream 20594 1231173 ~ 1239023 (+) False LOC122351657
XM_043248880.1 mRNA upstream 20594 1231174 ~ 1239023 (+) True LOC122351657
XM_043248877.1 mRNA upstream 180370 1067017 ~ 1079247 (+) True LOC122351655
XM_043248878.1 mRNA upstream 180370 1067025 ~ 1079247 (+) False LOC122351655
XM_043248879.1 mRNA upstream 201601 1048414 ~ 1058016 (+) True LOC122351656
XM_043248887.1 mRNA downstream 23834 1299556 ~ 1315895 (+) True LOC122351663
XM_043248412.1 mRNA downstream 384288 1660010 ~ 1688469 (+) True LOC122351375
XM_043248940.1 mRNA downstream 438090 1713812 ~ 1727530 (+) False bpifcl
XM_043248938.1 mRNA downstream 438091 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA downstream 438091 1713813 ~ 1736320 (+) False bpifcl
TU98836 other upstream 124628 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 399461 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 454608 797133 ~ 805009 (+) True G66727
TU98627 other upstream 797588 459574 ~ 462029 (+) True G66657
XR_006251792.1 other downstream 438091 1713813 ~ 1729395 (+) False bpifcl
TU99551 other downstream 1919073 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2637916 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2672314 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2705805 3981527 ~ 3983582 (+) False G67566

Expression Profile