RNA id: TU99214


Basic Information

Item Value
RNA id TU99214
length 1528
lncRNA type sense_over
GC content 0.38
exon number 4
gene id G67064
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1861854 ~ 2086178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacagacagttcTGCTTTTTAATCTCCAGTAAAGATGCTGCAGAAAGTCAGAGATCAGGTCAGGAAACATCCAGGACTTATTCCACAGTTTTTCTTCATCTGTCTGGGCATGGGTGGAgcgtttctttatttgtttcgtCTTGCCAGAGGACCTCATGTCACCTGGGACAAGAGCAGTAACCCTGAACCCTGGAATAAACTCAGTCCAAGCTACCAATATAAGTTTGTGGCCATTAACACAGACTACAAAAACCTGAAGAAGGAAGGACCAGACTTCTGAACATTTCACGGTTGTTGCTCAAGTACTTTAATTATGAAGATGCTGATATGCCCTTGCACCTCACTATTCTAAAGTTTttacacaaatgtgtgtgtttttaggaaAAAATGATATCCTCACAAACGCTGATAGACATATTCATTAGCATGAGATGAAAAGCGGAATAAAAACTAGACtagcttttcttttgtttatgcGCATTAGATGTTAAGCTTTCTAGAAATCCCCAAAACTGCAGAGATAACATGACCTCTCTCTAGTGAGCATGAGAAAGGGCGAAAGGAAGACGAGCAGATGTAAACAGAACCTGAACAGCACAGACTCATGGGAAGGAGATCGAGCTCCCTCAGGACTGCTCTTCAGCTGTTTAGAATGACACATGGAGAACAACACACAGATATCTTTGTCTCTCTCACTAGCTCTATATCTGCACTTATTATTGTAACCAACTATCATCATTCATCTTCACGTTTTTTAGTACTGGCAAGGCATACAGACAAACACAGGAAATAGAAAAATTACTCTACTGACCCCTAGAGactttcaaataatatatacatttctgttgttgtgggtttttttttatgtgagcaTTTAATCTTTAGTTACAGTACCGACCAAAATCCTATACACTGTGAATCAATCAAACAAAGATAACTAAGACTTATATTTTCAGGGAAGTTTGACTCCACAAGGGGCTTCTGTACATTGCAGGGTGGGCTAGAATTTTGGTGCCTTTCAGTTCATGATATGAAATACTGAATATAActaatagaaaatgtattttgttcaCGCAGTTGCAATCTAATATTAGAATTTTGCATATTCTTTTATGagattttttgtgttttttgcaagatgaataatgaataaaaaacactgaaactgaGTTGATTTAAAACGTTACTCATAAGATGTGACAAAGGGGACTGAGACGTGCGGATCCGTTCACACAGCTTTATTACAAGACATGTTCAAGAGAACAGTAAACAGGAAGCAAGAATGTAAGAATATTCCAGACAAGCAGAGGTCAGCGATCAGCAAACAGTGTCCAGAGACATCTGCATTTATTCAGGCAAAAGAAGCCCCAGCTAAGTATTGAGTCCTGGacatgctcatacttttcagttggccaagatttctaaaaatccgttctttgtattggtcttaagTCATATTCTAATTTTccgagatactgaatttggggttttcattagCTGTCACTTATCATcagaattaaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99207 lncRNA upstream 82644 1778914 ~ 1779210 (+) True G67057
TU99198 lncRNA upstream 92266 1769380 ~ 1769588 (+) True G67048
XR_006251855.1 lncRNA upstream 166325 1693724 ~ 1695529 (+) True LOC122352111
TU99157 lncRNA upstream 169378 1688655 ~ 1692476 (+) False G67023
TU99224 lncRNA downstream 29893 1895482 ~ 1903183 (+) True G67071
TU99225 lncRNA downstream 29893 1895482 ~ 1903183 (+) False G67071
XR_006251725.1 lncRNA downstream 218003 2083592 ~ 2086178 (+) True LOC122351283
TU99218 lncRNA downstream 220693 2086282 ~ 2086805 (+) True G67065
TU99258 lncRNA downstream 266373 2131962 ~ 2132396 (+) True G67097
XM_043248938.1 mRNA upstream 125534 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA upstream 125534 1713813 ~ 1736320 (+) False bpifcl
XM_043248939.1 mRNA upstream 125534 1713828 ~ 1736320 (+) True bpifcl
XM_043248940.1 mRNA upstream 134324 1713812 ~ 1727530 (+) False bpifcl
XM_043248412.1 mRNA upstream 173385 1660010 ~ 1688469 (+) True LOC122351375
XM_043248592.1 mRNA downstream 279916 2145505 ~ 2201714 (+) True LOC122351505
XM_043248142.1 mRNA downstream 388968 2254557 ~ 2258615 (+) True LOC122351218
XM_043248238.1 mRNA downstream 628892 2494481 ~ 2499298 (+) True nr4a2a
XM_043249416.1 mRNA downstream 1033574 2899163 ~ 2908133 (+) True pou1f1
XM_043248229.1 mRNA downstream 1060777 2926366 ~ 2930420 (+) True vgll3
XR_006251792.1 other upstream 132459 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 726865 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 1001698 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 1056845 797133 ~ 805009 (+) True G66727
TU98627 other upstream 1399825 459574 ~ 462029 (+) True G66657
TU99551 other downstream 1329206 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2048049 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2082447 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2115938 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 2254938 4120527 ~ 4125450 (+) False scrn3

Expression Profile