RNA id: TU99225


Basic Information

Item Value
RNA id TU99225
length 473
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G67071
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 1895482 ~ 1903183 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttgttttgtttaaagtggtTCTGCTTGAGGGCATCTATTTGATTATGGAGTAGCCGGTGCCCTGTGTGGATTTTGCTCCTCCATTGTGGAActacaaaaattgtattctttttctttccttttttataatttgtgtattttttgttttgttggacattttgtattgtttatattcaacattagtTTGCCTtggttgaatttgtttgttcgtttccctttcctttttcttgTGACATTATTGCCTGGATTAGTGTGTAAGGTTTTGGTTTGTGTAATACACATTGcatatactcattttatttttatcttcttacAGGAGCTGGGGTTCCACGGGTGCAGGAGCTTGAGGTGGTGGTGTCACTTCATCATTTGCTGTGGacacgtttgtgtgtgcagtgagtgtgtcggggtgtgtgtgtggaggtgtgtAAGTGTGCTTTTGGCTAAATTCAGCACTGGTGATCACTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99214 lncRNA upstream 29893 1861854 ~ 1865589 (+) True G67064
TU99207 lncRNA upstream 116272 1778914 ~ 1779210 (+) True G67057
TU99198 lncRNA upstream 125894 1769380 ~ 1769588 (+) True G67048
XR_006251855.1 lncRNA upstream 199953 1693724 ~ 1695529 (+) True LOC122352111
TU99160 lncRNA upstream 203006 1688655 ~ 1692476 (+) False G67023
XR_006251725.1 lncRNA downstream 180409 2083592 ~ 2086178 (+) True LOC122351283
TU99218 lncRNA downstream 183099 2086282 ~ 2086805 (+) True G67065
TU99258 lncRNA downstream 228779 2131962 ~ 2132396 (+) True G67097
TU99389 lncRNA downstream 738436 2641619 ~ 2654476 (+) True G67187
XR_006251721.1 lncRNA downstream 1014659 2917842 ~ 2924413 (+) False LOC122351269
XM_043248603.1 mRNA upstream 29875 1861809 ~ 1865607 (+) True ndufa4l2a
XM_043248938.1 mRNA upstream 159162 1713813 ~ 1736320 (+) False bpifcl
XM_043248941.1 mRNA upstream 159162 1713813 ~ 1736320 (+) False bpifcl
XM_043248939.1 mRNA upstream 159162 1713828 ~ 1736320 (+) True bpifcl
XM_043248940.1 mRNA upstream 167952 1713812 ~ 1727530 (+) False bpifcl
XM_043248592.1 mRNA downstream 242322 2145505 ~ 2201714 (+) True LOC122351505
XM_043248142.1 mRNA downstream 351374 2254557 ~ 2258615 (+) True LOC122351218
XM_043248238.1 mRNA downstream 591298 2494481 ~ 2499298 (+) True nr4a2a
XM_043249416.1 mRNA downstream 995980 2899163 ~ 2908133 (+) True pou1f1
XM_043248229.1 mRNA downstream 1023183 2926366 ~ 2930420 (+) True vgll3
XR_006251792.1 other upstream 166087 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 760493 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 1035326 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 1090473 797133 ~ 805009 (+) True G66727
TU98627 other upstream 1433453 459574 ~ 462029 (+) True G66657
TU99551 other downstream 1291612 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 2010455 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 2044853 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 2078344 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 2217344 4120527 ~ 4125450 (+) False scrn3