RNA id: TU99389


Basic Information

Item Value
RNA id TU99389
length 2752
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G67187
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2641619 ~ 2654476 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAGTAGATGAATACTCTATGATGTTCTCTGCTCATCATATTAATGACAAGATGATACATTACACAACAATGGTTTATTAGACTTAACAGTTGTATTATATTAATCTAGGAAACATGAGGTCATCTgagacttaaaaaaagaaagtacaaaCAGTTAACATTAAGACCAGTACAAAGtcacacattttcagtttttatgaaGCTGAAAAAATCCAGAAAAGTTCCGACTGTAACATGCATGAGGTGATAATAATGTCAAACAGTTCATATTATTAATTGTGATATATTTTCACAGTACTGCTCCAAATTATGTGCAGTCTTAAATAGCTTTAACTAAGTTCATTTATGCTGTGAATGCATTAAACGTGTGcatgttaaaatgatcaaataactAAGAGACAAATCACAAATCTTTAAACCCTCCAAGAATTAATATTGATTGAGTGCATTAAACAGACATTaatagaacactgatagaacatGGTGGATGCAATAGATGTGTACATACAGTAGCAATGCATAGAGctgtacaatattttttaaacatattatatatacaccaaGCATTATCACTCACATTTTTTCCTCTGCAGTTTTTcgatttcatattaaaaaaatatttgctttaatatGTACATCAATGCTCAAAAAAGCCTAGTTGATCCATTTGTACAAATGTGTGTCCAGGACCAGTGAATCAGAATCAGTGACAGCTGATGAAGATGGGGCTTTAAATGACTTGTTTTAGTCctaacactttacattaaggttacattagttaatgttagttaatgcattaactaatgggaacaaacaatgaacaatatattccggtatttattcattttttgttaacgttagttaatgcaaatacagttgttcattgttagttcatgttaatccACAaggcattaactaatgttaacgacttttgattttaattatgcattaataaatgttgaaattaacttTAACTAAGATTGATAAATAGatgtattgttcattattatttcttgttAATTAAATAGTTAACTGGCCttaaaccttattgtaaagtattaccaTTTTAGGTTTACATGTGAGATGCTGCTGCTTACATGCTGTAcccaaaatgtttatattcaggcacaaaataacacattattatttaatattaaatataaaatgaacatttgatgGATGAATCAGCAGGTCTTACTGTAAcccaaaataaagcataaaacaacaacaataataatagcaataataggTTCATTAGGcattatgacattattttaataaagtagtGTGTTTAAATGAGGAATGGGTCCTAAAAATCACATTCTtactatttctactttttttcagaaactaATTCAATGTCCTGAAATAACGAAAAGTTGATTTTTCCATGAACCCCACACACATTTTCCAATGTACCGGAAAATGTGTTAACTAAATACAGATAAAGTAGATACAACACAGTTAAACCCTCCATAAACTAAAATCACATAAATGAAACTGTGTATGATAAAATGGGGAACAAATGCGGAAACAAATGaatccttaaagggatagttgatCCAAAAAGTTGATTCAAATATTGAGTCCTTAATACATTGccactgtaataaaaaaacaaaataataataataatatataaatatatagtttaattagtttatgcaaagagtcagaTAATGCTTTGGTATAAATTTGCATAGCAACATGTGACTACAAGTGCCATGGCAAAGCATGATGGGGAAACTAAGATCCTCAGCCCGATTTCTAGTTAAATGTAGgttaaagtttaataaaagaatGCAGCGATGCAGTAATACCTAAAATGTAACAGTTTggtgtttaacagaagaaagacaTCACAAGTTtggagtgagtaaatgatgagaaaattttcattttagagcaGCTATCCCCTTAAGGCAGGTCGAGTACGTCACTGAAAAAGATCATGTTAGTTTTGAGAAACAGCAGCAAGTAATACAGTTGGCGTACAATCCACTGACCAACGCACAATCCCTTCAGGTGCTGTATAGAAAGCAAACAGAGTTAAACTTCAGCACAGTGGAAGCTGACGCAATCTGTCCATCTCCAAAGAAACATAAGGGCTACTGTCAAAGATATGACGTGTAGGATATTAAGAGGCACCAAAACTCCCACACAGGATGAGCAGCATAGATAGCCAGTGACACATGCTCAGATCAGAGACAGCAAGCGCTTAAACCTCGCCAAGAGCTGGTCGCGGGCTACGATCTGACCCCAGACCAGAGAATCTGAGAGCTAGAGGAAGCAGTCCAGACACACGCCTGGCCACAAACGGGTCAGCAAATGGGCTGTGCGTGGTTCTCCTGATCAAAGCCTGGCTGAACTCGATCATGAACCAGAAAATGACGGCCGTAAACATGACTCTGGGTCTCATGGTGTGTGGCGCGTGACGAGATTCAAGCCTGAACTGGTTGTCGCCGGCTCTGTCAGACACTTAGCGTCATGTTCCTCAAGATCCACTGCTGTGATCGCCTGCCGCTGCAGTCTCTGAGAGTGGGAACCATTTTATCCTCTTCAGAAGGCATGTCCAGACACTGGTTACTGTTCACATGGAGCAGAGTCAGCCGCTGTGAGGAAACACGGATTCCTCTGCATCGTACTCAAACATCTGGTTTCCTTTCATGTGGTGGCACTTCAGCATAACAACAGGTCCATTAAGCCGCGATGCATCCAGACACAGGTCATCGGTTCGAATCTCTTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99258 lncRNA upstream 509223 2131962 ~ 2132396 (+) True G67097
TU99218 lncRNA upstream 554814 2086282 ~ 2086805 (+) True G67065
TU99217 lncRNA upstream 555441 1861854 ~ 2086178 (+) False G67064
XR_006251721.1 lncRNA downstream 263366 2917842 ~ 2924413 (+) False LOC122351269
TU99463 lncRNA downstream 263387 2917863 ~ 2924636 (+) True LOC122351269
XR_006251720.1 lncRNA downstream 300868 2955344 ~ 2957198 (+) False LOC122351258
TU99473 lncRNA downstream 300924 2955400 ~ 2957197 (+) False LOC122351258
TU99474 lncRNA downstream 300924 2955400 ~ 2957197 (+) True LOC122351258
XM_043248238.1 mRNA upstream 142321 2494481 ~ 2499298 (+) True nr4a2a
XM_043248142.1 mRNA upstream 383004 2254557 ~ 2258615 (+) True LOC122351218
XM_043248592.1 mRNA upstream 439905 2145505 ~ 2201714 (+) True LOC122351505
XM_043248603.1 mRNA upstream 776012 1861809 ~ 1865607 (+) True ndufa4l2a
XM_043248938.1 mRNA upstream 905299 1713813 ~ 1736320 (+) False bpifcl
XM_043249416.1 mRNA downstream 244687 2899163 ~ 2908133 (+) True pou1f1
XM_043248229.1 mRNA downstream 271890 2926366 ~ 2930420 (+) True vgll3
XM_043248231.1 mRNA downstream 271890 2926366 ~ 2930420 (+) False vgll3
XM_043248230.1 mRNA downstream 271890 2926366 ~ 2930420 (+) False vgll3
XM_043248232.1 mRNA downstream 271890 2926366 ~ 2930420 (+) False vgll3
XR_006251792.1 other upstream 912224 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 1506630 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 1781463 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 1836610 797133 ~ 805009 (+) True G66727
TU98627 other upstream 2179590 459574 ~ 462029 (+) True G66657
TU99551 other downstream 540319 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 1259162 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 1293560 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 1327051 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 1466051 4120527 ~ 4125450 (+) False scrn3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU430850 True 883 lncRNA 0.33 3 NC_047619.1 11092708 ~ 11093750 (-)