RNA id: TU99533


Basic Information

Item Value
RNA id TU99533
length 729
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G67296
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3052494 ~ 3053222 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCCAGAGGGGTGCTATAATGTGCTGAATTAGGCTTCTGGCAGACTGTAACAGACTGTCAGGTGTCTTCATGAACTTCCCCATTGAAGAGTTCTTCTGGGCTGATACTGTAGGTGAACCTTGCTTTGTTTTCATGAGAGGTTTTCATTTCCTCCTCATCAGTGCTGGGTAGTCATCCAGAAACCTGAAGCGGGCTGCTTGTAATTTGAATcagttttaaaatactgtaatcaGGCTAGTTGCTTTTTACTGATTACATAATAGACACGCAATAAATGATCTAGTCTTGTGCACATTCACATAGAAACCAGTCACTGAGAGACCACAGAGATCAAACAAGCGGATCTGCAAAAAGGATTTCAGTTTTGAGTAGTGTTTTCTTAACACCGCAACATTGATTTTGGgtcaacaaataaaacactatcgCTTTCAGTAAGCtccttattttgaaattattggctttttattaaacacaaaccCCAGTTTGGAAAACTTTGACGTAATGCAATGTCTAATGTGCTTCGTTTCATTGTTAGcaacaaatgaaatatattttgtatttatttacaaagctATTAAAATCAGTGTGATAAGCAAGTGATATAAAGGTAATCAAAAAGTGGTGTgattataaaatgtgtaattgtaATGGATTACGTTACCAAGTTTTTCCATCTAACTTGGAATCAGTAATGGATTGcaatattttaactaatttacCCAGCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251720.1 lncRNA upstream 95296 2955344 ~ 2957198 (+) False LOC122351258
TU99473 lncRNA upstream 95297 2955400 ~ 2957197 (+) False LOC122351258
TU99474 lncRNA upstream 95297 2955400 ~ 2957197 (+) True LOC122351258
TU99463 lncRNA upstream 127858 2917863 ~ 2924636 (+) True LOC122351269
XR_006251721.1 lncRNA upstream 128081 2917842 ~ 2924413 (+) False LOC122351269
TU99543 lncRNA downstream 210275 3263497 ~ 3279327 (+) False LOC122351398
TU99544 lncRNA downstream 213769 3266991 ~ 3280052 (+) True LOC122351398
TU99592 lncRNA downstream 332408 3385630 ~ 3385950 (+) True G67347
TU99593 lncRNA downstream 333750 3386972 ~ 3387192 (+) True G67348
TU99656 lncRNA downstream 365865 3419087 ~ 3424421 (+) True G67389
XM_043248600.1 mRNA upstream 35985 2978307 ~ 3016509 (+) True tsc22d1
XM_043248602.1 mRNA upstream 35985 3010513 ~ 3016509 (+) False tsc22d1
XM_043248601.1 mRNA upstream 35985 3013585 ~ 3016509 (+) False tsc22d1
XM_043248148.1 mRNA upstream 84529 2966046 ~ 2967965 (+) True kctd4
XM_043248229.1 mRNA upstream 122074 2926366 ~ 2930420 (+) True vgll3
XM_043249066.1 mRNA downstream 1140 3054362 ~ 3137945 (+) True enox1
XM_043248480.1 mRNA downstream 141551 3194773 ~ 3196618 (+) True LOC122351419
XM_043248461.1 mRNA downstream 209385 3262607 ~ 3279340 (+) False LOC122351398
XM_043248472.1 mRNA downstream 310512 3363734 ~ 3384177 (+) True epsti1
XM_043248473.1 mRNA downstream 310512 3363734 ~ 3382804 (+) False epsti1
XR_006251792.1 other upstream 1323099 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 1917505 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 2192338 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 2247485 797133 ~ 805009 (+) True G66727
TU98627 other upstream 2590465 459574 ~ 462029 (+) True G66657
TU99551 other downstream 141573 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 860416 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 894814 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 928305 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 1067305 4120527 ~ 4125450 (+) False scrn3