RNA id: TU99543


Basic Information

Item Value
RNA id TU99543
length 670
lncRNA type sense_over
GC content 0.49
exon number 4
gene id LOC122351398
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3262607 ~ 3280052 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTCGATCGCATTCCACTTATGGAGGCCTCTGGGTCAGGTGATTACAGAAGCTGCTAAGAAGTTACCCTCTGCGTCGTTTTCTGCATATTACAAAGGTGGATTTGAGCAGAAGATGACCAGACGGGAAGCCAGCCTTATTCTCGGGATCAGTCCGACCAGCACCAAGACCAAGGTACGGGAAGCCCACAGAAGGATCATGGTCCTAAATCATCCAGATAAAGGTGGATCCCCGTATTTGGCAGCAAAGATCAATGAAGCAAAAGATCTTCTTGACTCTGGCCCTCGGCGCTGACCCAGCTTGCCCGATCTACCCCAACAGAGAGTTACATCTACTTCAGAGCCGCCAACTCACCCACGAGCCTCCACAAGTCATTGTTCTCCTCCGTGTTTTTCTGCCATAAATCAGCCAGCTCTTAGCATACTCCTCTCCATTCCATCCCTCACTGTTCCCCACCACCGCTTTAATACAAGTCGGCATAGTTGGATTCTTCACGTTAAAGGATCTTCACGCTGTCCTTGCGAAATATCTCACGGCAGCCTTTATTATTTATCGAGGTGACTTGTGTAATGTTCAACGTCTCCTGAAAACGGCGGATGTGTCATTTCCGGTGGTCTGAAAGGCCTAAAGTGCGTAGGTGTTAAGTTATTTTAGCATGCTGAATAAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99533 lncRNA upstream 210275 3052494 ~ 3053222 (+) True G67296
XR_006251720.1 lncRNA upstream 306299 2955344 ~ 2957198 (+) False LOC122351258
TU99473 lncRNA upstream 306300 2955400 ~ 2957197 (+) False LOC122351258
TU99474 lncRNA upstream 306300 2955400 ~ 2957197 (+) True LOC122351258
TU99463 lncRNA upstream 338861 2917863 ~ 2924636 (+) True LOC122351269
TU99592 lncRNA downstream 106303 3385630 ~ 3385950 (+) True G67347
TU99593 lncRNA downstream 107645 3386972 ~ 3387192 (+) True G67348
TU99656 lncRNA downstream 139760 3419087 ~ 3424421 (+) True G67389
TU99667 lncRNA downstream 157770 3437097 ~ 3441744 (+) True G67396
XR_006251741.1 lncRNA downstream 307476 3586803 ~ 3592240 (+) False LOC122351351
XM_043248480.1 mRNA upstream 66879 3194773 ~ 3196618 (+) True LOC122351419
XM_043249066.1 mRNA upstream 125552 3054362 ~ 3137945 (+) True enox1
XM_043248600.1 mRNA upstream 246988 2978307 ~ 3016509 (+) True tsc22d1
XM_043248602.1 mRNA upstream 246988 3010513 ~ 3016509 (+) False tsc22d1
XM_043248601.1 mRNA upstream 246988 3013585 ~ 3016509 (+) False tsc22d1
XM_043248472.1 mRNA downstream 84407 3363734 ~ 3384177 (+) True epsti1
XM_043248473.1 mRNA downstream 84407 3363734 ~ 3382804 (+) False epsti1
XM_043248786.1 mRNA downstream 228598 3507925 ~ 3584691 (+) True vwa8
XM_043248787.1 mRNA downstream 228598 3507925 ~ 3572856 (+) False vwa8
XM_043248433.1 mRNA downstream 391235 3670562 ~ 3742739 (+) True mycbp2
TU99551 other upstream 66976 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 1534102 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2128508 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 2403341 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 2458488 797133 ~ 805009 (+) True G66727
XR_006251861.1 other downstream 634311 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 668709 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 702200 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 841200 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 861727 4141054 ~ 4222171 (+) True G67630

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000080_03768413_03792359.mRNA True 991 mRNA 0.46 6 CI01000080 3768183 ~ 3792412 (-)