RNA id: TU99708


Basic Information

Item Value
RNA id TU99708
length 534
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id LOC122351601
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3606570 ~ 3619306 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTGTGTCCACATGCACGAAAGATTTGTTTCCTGAAGCCAGTTTCAAGCAATGCTTTTGAGGCCCGACTCCTTAATCCTAAAGAGACACAAGATGGCGCCGATCAAAGATCTATTCTACCAAACAGCTTTCGTATCAAAACAGAGAGAGCGGAGTAAGCAGTGCCGCTGTTAGATGAGAGCGTGCGGTCTGACCTGCGTTGGCTCTGTAGCTCTGGGAGTCTGTGGCTGAGCTGGGGCTGGGCATGTGCAGCTGCTGGAAGGACAGGCCGCTGAGGTACTGAGGCGTGGAGGGGCTGCGGCGGCACGAGAGAGTGCCGGAGAGGCTCTGGGAGTGGGACGTGCTGCGCTGCATGGAGGACGTCCGGAAGAGCCGCGGCTGTGGAGCGGACAGCTGATCgtactcctcctcctcctcctcctcctccagctcggCCTCCATCCTCATGCTCCTGCGGGCGCCTGCGTGCACCGAAAAACTAGCACTGCGGCGCGTGGCTGTGGCGGCGGTGCTCGCGTACTCCTGACGCAGacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99700 lncRNA upstream 1020 3601318 ~ 3606374 (+) True G67418
XR_006251741.1 lncRNA upstream 15154 3586803 ~ 3592240 (+) False LOC122351351
XR_006251740.1 lncRNA upstream 15154 3586803 ~ 3592240 (+) True LOC122351351
TU99667 lncRNA upstream 165650 3437097 ~ 3441744 (+) True G67396
TU99656 lncRNA upstream 182973 3419087 ~ 3424421 (+) True G67389
XR_006251706.1 lncRNA downstream 23655 3642961 ~ 3646614 (+) True LOC122351161
TU99751 lncRNA downstream 209517 3828823 ~ 3829617 (+) True G67448
TU99748 lncRNA downstream 209685 3828991 ~ 3829772 (+) False G67448
TU99905 lncRNA downstream 327228 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA downstream 364863 3984169 ~ 3985934 (+) False cdca7a
XM_043248786.1 mRNA upstream 22703 3507925 ~ 3584691 (+) True vwa8
XM_043248787.1 mRNA upstream 34538 3507925 ~ 3572856 (+) False vwa8
XM_043248472.1 mRNA upstream 223217 3363734 ~ 3384177 (+) True epsti1
XM_043248473.1 mRNA upstream 224590 3363734 ~ 3382804 (+) False epsti1
XM_043248461.1 mRNA upstream 328054 3262607 ~ 3279340 (+) False LOC122351398
XM_043248433.1 mRNA downstream 51256 3670562 ~ 3742739 (+) True mycbp2
XM_043248434.1 mRNA downstream 51256 3670562 ~ 3742739 (+) False mycbp2
XM_043248435.1 mRNA downstream 51256 3670562 ~ 3742739 (+) False mycbp2
XM_043248439.1 mRNA downstream 51256 3670562 ~ 3742739 (+) False mycbp2
XM_043248442.1 mRNA downstream 51256 3670562 ~ 3742739 (+) False mycbp2
TU99551 other upstream 410873 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 1877999 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2472405 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 2747238 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 2802385 797133 ~ 805009 (+) True G66727
XR_006251861.1 other downstream 294332 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 328730 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 362221 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 501221 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 521748 4141054 ~ 4222171 (+) True G67630

Expression Profile