RNA id: XM_043248534.1


Basic Information

Item Value
RNA id XM_043248534.1
length 1825
RNA type mRNA
GC content 0.50
exon number 10
gene id cdca7a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3981346 ~ 3985962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatttaaataaccTAGTACGTATAATACAACATGTGTCTACTCATCTCATAATCAAATCGATAATACAGTTGTTAAATCTTCAGCCTATTCGATTGCGTTACTGTATTAATTTTACGAAGCTTCCAGGACTCGCGTGTGGCGCGGAAGCGAGTAACGCCTCTTCAAGAATTACCCGCCAACTTCCAGACGAAACTCCTCTCCACAGGACTGAGACGCACACATTCACCGTGGACTCAGGCAGAGTATAAACTCACACCCCTTCAAATCACAGCGAACTCAACACAATGCGCTCTAAGAGGCAGCAGGCGTCTCCTCCCTCCACCAGGATGAACCTGCGCAGCTACAGGAACAACGCTGTGCTTCCCATGGAaacctcctcctcttcctcagacGACAGCTGCGACAGCTTTGGATCTGATGGCTTCGGGACCTCGaagaGACCGCTGAGACAGACGAGAAGCTCTGCTCGGGTTCAGAAAGCGTTTAGCGCTTTACCTGTGACGGAGGAAGAGGATGCGTGCAGCGGCTTTGAGAACGACTTGAACGACGACATGACTGAGATGAAAATGGACTCTGATTCTGAGGCCTGTTCGCCTCCCAGAAAAATGCGCAAATCTTTCACGCTCCGAGTTGCCATGAAGTTCCCGAACAGACAGGCCAGTCTAACAAAGCCAGAATCGCCCGAGTCCAAACCCAAAGACCCAGAGCCGGACTCTGAGGAAAATAACTTCATGCTGAAGAGAGCGCTGAACATCAAAGAGAACAAAGCTATGCTTGCGAAGCTAATGGCCGAGCTGGAGAAGGTTCCTGGACCCATTCCCAGGAGGTCTGCTCTGTCACAGGGCAATACGGTAAGAtctctggctGCAGGCTCTCTGTCCTCTCCAGAGGATGAGTACCCCGAGCAAACGTCCCGTCCTCTCACACGCTCCCGGTCCCTGGTTGACAGGCCTCCCTCCCCTCCTCCAGAGGATGAGTCAGAGGACAAATACAGCCTGGTCCGTGGAAACGGActtgatgatgaggatgatgatgaggaagaGAGAGGGCCTCGTCGGCGCAGCTATAACGGCTATCTGACGATTCCTCATGTGGTGAGGCCCGTGGAGGAAATCACCAAAGCTGAGCTGGACAACGTCTGCGTGAACGTCAGAGAGAAGATTTACAACCGGGCCACTGGATCCACTTGTCATCAGTGTCGACAGAAAACGATCGACAGCAAGACCAACTGCCGCAACCAGGATTGCGTGGGAGTTCGGGGGCAGTTCTGCGGGCCGTGTCTCAAGAACCGATACGGAGAAGACGTCCGTGAAGCCCTCCTGAACCCGGACTGGCTCTGTCCCCCGTGCAGGGGCATCTGTAACTGCAGCTTCTGCCGTGCCAGAAAGGGCCGCTGCGCTACCGGCGTGCTCGTGTACCTGGCCAAGTACCACGGCCATGATAATGTCCACTCCTATCTCAAAAGTTTAAAGAAGGAACTAGAGGAAAGTGAATAAAATGGTTGCCATGTCCGGCGGAGTGCAACCATACCTGACATTGTCTTCAAGTGATTCTCAGAGCTTCCTCAACCCCTGAAACCTACCGCAGGTTCAATCGGAGTAGACCGGTATCAATTGTCTACATAATCCTTAagtttgcattgttttaaatgtatactttttttttttttttttttttttgagattgtACTGTATTGGAAGCTTTGAAATGTTGCCGGCTGTGACGCTTGTTCTCTACTGTTTTTACCCTGGTTTTTCTGAACTGTAGATGCTGTTCTAACTGCACAATGTTCTGCTGCCGTACTTGAATAAAACTTGTTCTTTT

Function

GO: NA

KEGG:

id description
K23408 CDCA7, JPO1; cell division cycle-associated protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99748 lncRNA upstream 151574 3828991 ~ 3829772 (+) False G67448
TU99751 lncRNA upstream 151729 3828823 ~ 3829617 (+) True G67448
XR_006251706.1 lncRNA upstream 334732 3642961 ~ 3646614 (+) True LOC122351161
TU99708 lncRNA upstream 362040 3607394 ~ 3619306 (+) False LOC122351601
XR_006251781.1 lncRNA upstream 371846 3606570 ~ 3609500 (+) True LOC122351601
TU99977 lncRNA downstream 52634 4038596 ~ 4038822 (+) True G67604
TU99979 lncRNA downstream 78675 4064637 ~ 4064961 (+) True G67606
TU100026 lncRNA downstream 170694 4156656 ~ 4157963 (+) True G67637
TU100030 lncRNA downstream 176394 4162356 ~ 4165072 (+) True G67641
TU100051 lncRNA downstream 221728 4207690 ~ 4208541 (+) True G67657
XM_043248533.1 mRNA upstream 135 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA upstream 135 3948020 ~ 3981211 (+) True zak
XM_043248084.1 mRNA upstream 35738 3925891 ~ 3945608 (+) True LOC122351193
XM_043249752.1 mRNA upstream 58794 3913638 ~ 3922552 (+) False LOC122352174
XM_043248310.1 mRNA upstream 70526 3906741 ~ 3910820 (+) True LOC122351330
XM_043248594.1 mRNA downstream 123688 4109650 ~ 4112225 (+) True sp9
XM_043249288.1 mRNA downstream 134565 4120527 ~ 4127013 (+) False scrn3
XM_043249290.1 mRNA downstream 134565 4120527 ~ 4125447 (+) False scrn3
XM_043249289.1 mRNA downstream 134568 4120530 ~ 4127013 (+) True scrn3
XM_043248257.1 mRNA downstream 395562 4381524 ~ 4382885 (+) True hoxd13a
TU99912 other upstream 30035 3948036 ~ 3951311 (+) True G67566
XR_006251861.1 other upstream 58468 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 784825 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2251951 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2846357 1127526 ~ 1134989 (+) True G66795
XR_006251811.1 other downstream 134565 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 155092 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 231088 4217050 ~ 4220395 (+) False G67630
TU100101 other downstream 424914 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 571181 4557143 ~ 4562602 (+) True G67717

Expression Profile