RNA id: TU99977


Basic Information

Item Value
RNA id TU99977
length 227
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G67604
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4038596 ~ 4038822 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCCGTCAGTGTAGTGAACTGCGAGGTTTGTTTAGTTACAGCTTTTGCCTTATTACCTGTTTAGTTTATTGGCAAGAAAACCTCgatcttattatatatattttttaatattgtctAACATAGTTATCTAACGTATTTAGTAAGAATACTAGTTCACTCTGCTTATTCAGACTGGAAAACTGATGATACatcgtttttttaatgttcttgtAATCAGCAATTAAG

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99905 lncRNA upstream 6776 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA upstream 52662 3984169 ~ 3985934 (+) False cdca7a
TU99748 lncRNA upstream 208824 3828991 ~ 3829772 (+) False G67448
TU99751 lncRNA upstream 208979 3828823 ~ 3829617 (+) True G67448
XR_006251706.1 lncRNA upstream 391982 3642961 ~ 3646614 (+) True LOC122351161
TU99979 lncRNA downstream 25815 4064637 ~ 4064961 (+) True G67606
TU100026 lncRNA downstream 117834 4156656 ~ 4157963 (+) True G67637
TU100030 lncRNA downstream 123534 4162356 ~ 4165072 (+) True G67641
TU100051 lncRNA downstream 168868 4207690 ~ 4208541 (+) True G67657
TU100015 lncRNA downstream 178228 4217050 ~ 4219510 (+) False G67630
XM_043248534.1 mRNA upstream 52634 3981346 ~ 3985962 (+) True cdca7a
XM_043248533.1 mRNA upstream 57385 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA upstream 57385 3948020 ~ 3981211 (+) True zak
XM_043248084.1 mRNA upstream 92988 3925891 ~ 3945608 (+) True LOC122351193
XM_043249752.1 mRNA upstream 116044 3913638 ~ 3922552 (+) False LOC122352174
XM_043248594.1 mRNA downstream 70828 4109650 ~ 4112225 (+) True sp9
XM_043249288.1 mRNA downstream 81705 4120527 ~ 4127013 (+) False scrn3
XM_043249290.1 mRNA downstream 81705 4120527 ~ 4125447 (+) False scrn3
XM_043249289.1 mRNA downstream 81708 4120530 ~ 4127013 (+) True scrn3
XM_043248257.1 mRNA downstream 342702 4381524 ~ 4382885 (+) True hoxd13a
TU99910 other upstream 55014 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 87285 3948036 ~ 3951311 (+) True G67566
XR_006251861.1 other upstream 115718 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 842075 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2309201 1713813 ~ 1729395 (+) False bpifcl
XR_006251811.1 other downstream 81705 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 102232 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 178228 4217050 ~ 4220395 (+) False G67630
TU100101 other downstream 372054 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 518321 4557143 ~ 4562602 (+) True G67717

Expression Profile