RNA id: TU99979


Basic Information

Item Value
RNA id TU99979
length 325
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G67606
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4064637 ~ 4064961 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAATATTCGTCTTTGCACAATTAATATCTAAAGGTGTGTGATATAACAGTTCCTGCTCATCTCTCCTGTGTAATGCACTTACAGCCCAACGTATTCTCACTCCCAACTTATCACACATAGAAACTTGGTCCTCCGGGGCTACTTTTTAACGCAGGTTACCCCtttaggtcatttttttttggatgtgcaGGGCGCGCCATAGCTTTCGATGAGAAACTTTTGGCCTCAGACACATGGATTCACCGCTATAAGGAAAtgactattaataaatatattaggtgGCTTTAACTACTATGCTCTCACATAAAAACGAAGCACATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99977 lncRNA upstream 25815 4038596 ~ 4038822 (+) True G67604
TU99905 lncRNA upstream 32817 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA upstream 78703 3984169 ~ 3985934 (+) False cdca7a
TU99748 lncRNA upstream 234865 3828991 ~ 3829772 (+) False G67448
TU99751 lncRNA upstream 235020 3828823 ~ 3829617 (+) True G67448
TU100026 lncRNA downstream 91695 4156656 ~ 4157963 (+) True G67637
TU100030 lncRNA downstream 97395 4162356 ~ 4165072 (+) True G67641
TU100051 lncRNA downstream 142729 4207690 ~ 4208541 (+) True G67657
TU100015 lncRNA downstream 152089 4217050 ~ 4219510 (+) False G67630
TU100017 lncRNA downstream 155014 4219975 ~ 4222171 (+) False G67630
XM_043248534.1 mRNA upstream 78675 3981346 ~ 3985962 (+) True cdca7a
XM_043248533.1 mRNA upstream 83426 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA upstream 83426 3948020 ~ 3981211 (+) True zak
XM_043248084.1 mRNA upstream 119029 3925891 ~ 3945608 (+) True LOC122351193
XM_043249752.1 mRNA upstream 142085 3913638 ~ 3922552 (+) False LOC122352174
XM_043248594.1 mRNA downstream 44689 4109650 ~ 4112225 (+) True sp9
XM_043249288.1 mRNA downstream 55566 4120527 ~ 4127013 (+) False scrn3
XM_043249290.1 mRNA downstream 55566 4120527 ~ 4125447 (+) False scrn3
XM_043249289.1 mRNA downstream 55569 4120530 ~ 4127013 (+) True scrn3
XM_043248257.1 mRNA downstream 316563 4381524 ~ 4382885 (+) True hoxd13a
TU99910 other upstream 81055 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 113326 3948036 ~ 3951311 (+) True G67566
XR_006251861.1 other upstream 141759 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 868116 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2335242 1713813 ~ 1729395 (+) False bpifcl
XR_006251811.1 other downstream 55566 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 76093 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 152089 4217050 ~ 4220395 (+) False G67630
TU100101 other downstream 345915 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 492182 4557143 ~ 4562602 (+) True G67717

Expression Profile