RNA id: XM_043248041.1


Basic Information

Item Value
RNA id XM_043248041.1
length 1383
RNA type mRNA
GC content 0.42
exon number 9
gene id ercc1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15909284 ~ 15913570 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTGCGACACTTTTGTCTGACACTGTTAAACTGTGATGGCGGTAGATGGACTTTGTTTGTGCATTTActgattaattataaaatggaaaaaaagaggtTCAATATCAATTTGGACGACACCGCGTTCACAAAGGAAAGAAGTCTGGTGACATCTTTATTTAAGGCCAAGGACGGTCAAGCAGAGACCTCATCTGCTCAGAATGCTCTTCCAGCTCCCGGCCAACCACTGTCCTACGCAGATTTTGTCGTTCAGAACAAAAACAGAGCTCTTCAGGGAGCAGCCCATGTACCAGAGAAACAAAGTAGGAGCGATGCTGCAGCGCAAAGCAATGTAAATACAGCTGACAGTGGATCAGTTAGTACATCCTCCACAGACTCCGGGAAGCCTGAGACTGAGCAGCGGAGACCAGAAAAAGTACCGACAGAAGATCAAACGAAGGAGGAAAGTCAGAGTTCGGAGAGTTGTATCATTCCTCCTCATCTCTTAGGATCCGGAAACAGTATTATTGTCAGTCCTCGACAGAGAGGCAACCCCATTCTAAAGTTTGTGAGAAATGTTCCTTGGGAATTTGGAGAAGTTGTGCCTGACTATGTTTTGGGGCGGACAACTTGTGCTCTTTTTCTGAGTGTGCGTTACCATAATTTGAACCCAAACTACATCCACGAGCGTCTGAAACAGTTGGGTCAGAGTTTCACCCTCAGAGTGTTGCTCGTCCAAGTTGATGTGAAAGACCCTCATCATGCACTGAAAGAGCTTGCTCGCATAAGCATCATGGCTGACTGTACCCTCATTTTGGCCTGGAGTCCTGAAGAAGCAGGTCGTTACCTTGAGACTTATAAATCCTACGAGAAGAAACCTGCAGATGTTCTGAAAGAACAAGTGGAGAAGAATTACCTGTCCCAGGTTACAGATTGTTTAACCACAGTAAAGTCTGTCAATAAGACCGATGCCATGACTCTTCTGTCTACATTTTCTTCTTTGGAGGGCATCGTTAAGGCATCTAAAGAAGAACTAGTGTTGTGTCCTGGACTTGGTCCACAAAAGGCAAGAAGGCTTTATGATGTACTGCATCAGCCCTTCATAAAGACCAAAAAGAAGGAAAGCTGATAAAGCcaaactgttttttgttttttttaaaatcaccaacTGTCTTCAAACAAAGTGCCTAGAACAAGGATCTAAGGCAATATAGCCAATGATCATCTGGAGGCTTCAGGCTCTTTTTGGCCTGTGATTATCGAACTGTAATTGTGGAAAAACAGACATAAATGCagtggtttatttattatttttgtttaaagtttaaCCTGCTGTAAATTGAGTTTGACTTAGTTTGActtgtttatgaaaaaaattcaataaatttcAAGGGTATTCTGCA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10849 ERCC1; DNA excision repair protein ERCC-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104518 lncRNA downstream 146615 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 265008 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 270848 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 487707 15418999 ~ 15421577 (-) True G70581
TU104305 lncRNA downstream 633443 15269829 ~ 15275841 (-) True G70503
XR_006251840.1 lncRNA upstream 34543 15948113 ~ 15953976 (-) True LOC122352066
TU104861 lncRNA upstream 204712 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 691797 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 691797 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 696700 16610270 ~ 16610561 (-) True G70955
XM_043248042.1 mRNA downstream 1717 15906028 ~ 15907567 (-) True LOC122351156
XM_043248043.1 mRNA downstream 5101 15902347 ~ 15904183 (-) True LOC122351158
XM_043249691.1 mRNA downstream 10132 15894122 ~ 15899152 (-) True dnajb11
XM_043249426.1 mRNA downstream 34399 15834539 ~ 15874885 (-) False satb2
XM_043249362.1 mRNA upstream 17051 15930621 ~ 15932536 (-) True olig1
XM_043248302.1 mRNA upstream 27320 15940890 ~ 15943090 (-) True olig2
XM_043248861.1 mRNA upstream 50224 15963794 ~ 15966467 (-) True gatd3
XM_043248860.1 mRNA upstream 53193 15966763 ~ 15973561 (-) True LOC122351640
XM_043249419.1 mRNA upstream 60995 15974565 ~ 15978301 (-) True hpxa
TU104521 other downstream 137420 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 509847 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 603309 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1655508 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1969416 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 903570 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 903570 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1322302 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2656185 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3806928 19720498 ~ 19721737 (-) False ankar

Expression Profile