RNA id: XM_043248043.1


Basic Information

Item Value
RNA id XM_043248043.1
length 961
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC122351158
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15902347 ~ 15904183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGGCTTTACTTCTCAGTCAGCAATTGCACCATGGTTCCTTGCATCTTTCTTCTCCTCATTGGTGTTCCTTTGGCTGGGGCCATGGAAAGTAGTATTATTGGAGGAAAAGAGGTTAAACGTCATTCCAGGCCATACATGGCATCTATTCAGTGCAGAAATCATCACACCTGTGGAGGGATGCTGATCAGAGAGGATTATGTACTGACAGCGGCCCACTGTTTGAATCGTAGTGACTTCTCTAGTCGAGACCACTTTGAGGTTGTTTTGGGAGCTCACAACATCAAGAACAAGGAGAAGACCGAGCAGAGGATCCCAGTGATTAAATACATTCGACATCCTATGTTTGAACGGAACAATGAAAAGGACTACAGCTATGATATCATGCTACTAAAGCTGAAGAAGAAAGCcaagctgaataaatatgtgAAAGTTATGCCTCTTCCtaagaaaaatggaaaaacaccaGCTAATGTTAAATGCTCTATAGCTGGTTGGGGGTCGAAAACAGCAAATGGAAATGAGATATCGGATGTGATGCGGGAAGTCAGTCTCAAACTGCAGCAGgactcaaaatgtaaaatatggtgGCAGCAGTACTTCGACTCTGAGAGAATGATCTGTAGTGTATCAGATGGGAAACATGCCTTTTTCAAGGGTGATTCCGGAAGTCCTCTTATCTGTAATACTAAACCACAAGGAATTGCTTCATATACCATTAAGGATGACTGTACAAATACCACATATCCCCAGGTTTATCTTAAAATCTCCTACTTTCTCAACTGgattaaaaagaacattaaataaGAATGACTAAATGAATACTCTTACCACTGCaactttaaaaatctttttgttttcattctgaGTTACTGATAAACAAGTGATAAGATTTCTAAACTAACTGGAAACTGAAAGCTCTGAAAACCTTTGAAAGctctgcaaataaaaataaaaatcg

Function

GO: NA

KEGG:

id description
K01353 GZMB; granzyme B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104518 lncRNA downstream 139678 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 258071 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 263911 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 480770 15418999 ~ 15421577 (-) True G70581
TU104305 lncRNA downstream 626506 15269829 ~ 15275841 (-) True G70503
XR_006251840.1 lncRNA upstream 43930 15948113 ~ 15953976 (-) True LOC122352066
TU104861 lncRNA upstream 214099 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 701184 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 701184 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 706087 16610270 ~ 16610561 (-) True G70955
XM_043249691.1 mRNA downstream 3195 15894122 ~ 15899152 (-) True dnajb11
XM_043249428.1 mRNA downstream 26250 15834539 ~ 15876097 (-) False satb2
XM_043249429.1 mRNA downstream 27462 15834539 ~ 15874885 (-) False satb2
XM_043249426.1 mRNA downstream 27462 15834539 ~ 15874885 (-) False satb2
XM_043249425.1 mRNA downstream 27462 15834539 ~ 15874885 (-) True satb2
XM_043248042.1 mRNA upstream 1845 15906028 ~ 15907567 (-) True LOC122351156
XM_043248041.1 mRNA upstream 5101 15909284 ~ 15913570 (-) True ercc1
XM_043249362.1 mRNA upstream 26438 15930621 ~ 15932536 (-) True olig1
XM_043248302.1 mRNA upstream 36707 15940890 ~ 15943090 (-) True olig2
XM_043248861.1 mRNA upstream 59611 15963794 ~ 15966467 (-) True gatd3
TU104521 other downstream 130483 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 502910 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 596372 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1648571 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1962479 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 912957 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 912957 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1331689 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2665572 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3816315 19720498 ~ 19721737 (-) False ankar

Expression Profile