RNA id: XM_043248059.1


Basic Information

Item Value
RNA id XM_043248059.1
length 1442
RNA type mRNA
GC content 0.41
exon number 6
gene id nifk
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18546236 ~ 18549389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTACCGACTTCCTGAACGAGGCACAACGTGGTTTTAGGAGAGAGCGCGCGACGCTAGCAGTACGTAGTagaatatatagatatatttgttttagcAATCTTATATTTAATCATGACAGAAGGTAAGTCATCAGAGAAGCCGGCGAAAAGCCTGCTGTCTTTGAATCCGAAGGAGGAAGCAGAGTTTCGGAAGAAGGTTCAGCAAGTAAAGAATCGTCCTAAATCGGGTCAGTCGCTTTCTTCTGGAGTGCTCTATGTTGGACATCTGCCTCGAGGATTGTTTGAACCTCAGTTGAAATCTTACTTTCAACAGTTTGGCAAAGTCACTCGAATAAGAGTTTCTAGGAGTAAAAAGACTGGAAGGAGCAAAGGCTATGGATTTGTGGAGTTTGAGTGTGATGAGGTGGCTAAGATTGTGGCTGAGACCATGAACAACTACCTTATCGGAGAACGGCTAATAAAGTGCCAAGTGATGCCACCTGAGAAGGTCCATGAAAAGCTGTTTCTAGGTTCCAAGTTAGGCTTCAAGAGACCAAAGCAGCCTGCAGTTACTCGTTACAACAAAAAGCATGCGGAAGAAGATCAGAAGAAAGTTGCTTCAAAGCTTTTAAGCAAAGAGTCTAAGCTTCGCAAGAGATTGGCGGCAAAGGGCATTGACTATGATTTTCCAGGATTTgcagcTCAGATTCCAGTCAAGAAATCCCAATTAGAAGCCAATGTTTCAGTATGTAGTGAGgaTGTCACTCCAGTGTGCACCCCATCAGTTTTGGAGAGGAGGAAGTCGATGAGAGTTGAGGATGAGGTTGATGTTGATGATGAAATAGTCATCAAAGCCAAATCTGCTACAGAAACCAGCGAGGATGTGGAAGATAGCAATGAAGAGTCTGATGAGGAGGAAGTTGAGGAGAATACGACATAAAAGGAGAATTCAATGACTAATAAAAAGACTTCATTCCCTGGTTTAGATGGGACACTGGACTCACTGTTTGAGCCATTTGTATGTGATTAGGTCAGTCCTCCCCTGTGGCTGGAGAagaggatcacacacacacactatcctGATTATCAGGCATCTGGTTGGAGGTGTGTTTTATGCAGATGTACAGATTACCTTTGCAGGGTACAATGTGGTTTCCCAGAAGTTGCCAAAGTCTGATTAACTacgtaataataaataaaatatgcaatgttCGTTTTAAAATGAAGCGGTAAAATGGATGTCATCGTATTTGGCGTTGTGTATTCTGTCCAGTACTATCTTCAGACATATAGGTAAAACGTGCTTAACCTGCAAAAGGGGATCAAATAAAgctcttttattgcatttgaaagatattttgatgaaaaagtTTTTGTATAAATTGTCACTATTGAGGTTGCTTACGTTTAAGGGGTATCATGAAATAAATGGAATCAATGGAATGCCTTTCAGTATAACCACTA

Function

GO:

id name namespace
GO:0010923 negative regulation of phosphatase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0005730 nucleolus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14838 NOP15; nucleolar protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 2238 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 4900 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 7536 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 515688 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 903798 17641910 ~ 17642438 (+) True G71167
TU105770 lncRNA downstream 198522 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 267749 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 340534 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 344162 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 430924 18980313 ~ 18985811 (+) True G71457
XM_043249580.1 mRNA upstream 9185 18518212 ~ 18537051 (+) True cacnb4a
XM_043249187.1 mRNA upstream 36210 18500302 ~ 18510026 (+) True stam2
XM_043249667.1 mRNA upstream 121168 18416183 ~ 18425068 (+) True sec22a
XM_043249360.1 mRNA upstream 133595 18368743 ~ 18412641 (+) True pdia5
XM_043249361.1 mRNA upstream 143131 18368743 ~ 18403105 (+) False pdia5
XM_043249613.1 mRNA downstream 547 18549936 ~ 18610928 (+) False clasp1a
XM_043249620.1 mRNA downstream 547 18549936 ~ 18610928 (+) False clasp1a
XM_043249625.1 mRNA downstream 548 18549937 ~ 18610928 (+) False clasp1a
XM_043249623.1 mRNA downstream 548 18549937 ~ 18610928 (+) False clasp1a
XM_043249621.1 mRNA downstream 548 18549937 ~ 18610928 (+) False clasp1a
XR_006251816.1 other upstream 596929 17736006 ~ 17949307 (+) False lrp1bb
TU105274 other upstream 1206614 17339127 ~ 17339622 (+) True G71130
TU105185 other upstream 1339731 17203797 ~ 17206505 (+) False jam2b
TU105078 other upstream 1626946 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU104753 other upstream 1796541 16745899 ~ 16749695 (+) False mpc2b
TU105623 other downstream 889 18550278 ~ 18552882 (+) False clasp1a
XR_006251851.1 other downstream 62606 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other downstream 62607 18611996 ~ 18619387 (+) False tfcp2l1
XR_006251742.1 other downstream 85717 18635106 ~ 18641180 (+) False plcd4b
XR_006251718.1 other downstream 133283 18682672 ~ 18688242 (+) False lmln

Expression Profile