RNA id: XM_043248061.1


Basic Information

Item Value
RNA id XM_043248061.1
length 2274
RNA type mRNA
GC content 0.38
exon number 7
gene id hnmt
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9570400 ~ 9574754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGTCTTTAAGAGTGGGGGCGTGGCTCATCTTTGTGTGGATGTGCGGCGGCGCAGCGTCTCGCTGCTCGTGTGAAAACGAAAAGAAGTGAAGGTGAAAACCATGGCAGCTCCATTCAGATCACTGGTGGAAGATTATCCAAGATACCTCCGATCCTTTGAGCTTTTTCTGGAGCGCTCATCAGAGCACCAGTGCATGCAGGACTTCATTCATAATATGCTACCAGACATACTGGCAAGTATTGGAGGCGGGAGATCCGTTTTCAATGTAATGGGAGTAGGGAGTGGAGCAGGTGAGATTGATCTAGAGATGCTAGCTCAACTACACCTGAAACATCCACGTGCCAGAGTCGACAATGAAGTGGTGGAACCAAGCAATGAAATGATGCACAAATATAAAGTTCGAGTGTCAACAACTCCAAATCTTGATCATATAAACTTTACTTGGAATAAGATGACGGCATCTGAATTCGAAAAACACTGGCAGGAAAACAACCCTGGGAAAAAAATGGACTTCATTCACATGATACAGATGCTGTACTACGTCAAAGATCCAGAGGCCACTGTCTCTTTTTTTCGGAGTCTTTTACACAAAGATGGGAAACTCTTAATCATTCTGGTGTCAGGTGAGAGTGGATGGGGAAAATTATGGACAACCTTTAAAGAACAACTCTGTAGTCCTGAGCTCACTCAGTGTGTTACTACAGGAGATATAAAGACCTTCTTACATACTGAGAGCATCCCCTACCGGAACTATGAGCTTCTGTCCCAGATGGACATCACAGAGTGCTTTACTGAGGGGGACCAGGTGGGAGAACTGCTGCTGGATTTCCTTACAGAGGTCATAGAGTTCAGTAAGAACGCTCCTGAAGACCTGAAGAAAGGAGTTCTGGACTTGCTGAGACATCCTGACTGCAGCAAAGAGGTGGATGGAAGGATCATATTCAACAACAACCTGGGAGTCTTGGTGGTTGAGCCGTAGCTCCAAGACTTGGTTGTATCTCACCTGCAAACGAATATATAATGGTCCTCAACCTTTCCAAAGCTCCTCATTGTCTACACTGTCATTAAAAGGCcccttgatttttaaaaaatgctcttAATTTACTCCTAATTATTAAGAATAATgaatcttaaaaaatgtaaatcttttaaaataatttatacatggagtaagatttttattcatttaatatgacatttctatatttatatgaCAAGTCTAGAAATCACACTTTAAAATTAGCCTACCTCACATATTACTTTAAACCCTCTAAAAagatatatttctaaaaaaaaaaattaactgaggTGTTGAGGTAGTAAATTAAactaagaaatatataattttttagttattttgtcttattttaaatcGTGTTTTGCCCTCCTGGTTGAGAATAAATGGTTAAGGAAATACAGAACATCAGTATTTTAACATAGTAAGAATCATAacaataacatatattttaataaatcttttcGAGAGCCTTCGAGAAACTATGGTTTTCTTTTTCGAGGTAATTATTGTTCCGaagaatttaatattataacatgACGTTGTTATCTGTGAACAAACGGGAAAAGGAAGACCATGGAGAACAATGCTGAGTTTATATTGCATCACGATCAAACAAAACCAGTTAACTAAAGGCCTGTGTAGGTGACGGGTCGTGAAGAGACCTTGTAGCACAAACTCCAGTATGAACAACTCTGTACATACTTTGTAAAAATAGTCTAAGCAGCAAAGTACAACTTGAGATTATATTGTTTGGTGACTGGTTGTGTTGTTATGACCCTACACCTTATTTAGTTTAGGACAGATGTTTAACTAGACAGGACAAAGGTTGGATAGATACATTTGAAGGTTAATAATACACGTAcctgatttgattacagagtgTAGAGGGCTTGTTAATAGCCTGCCTCCCCCTGATAGCACATGTACATCACAGAGACGTCTGTTTGACTTTTGCATCTGCAAGACTTATTTTTTGGGTGTATGCTCATCTGAAATATGTCTATAGGATGCTTCTATCAGATGTCAAATAGACATTTATTAGAATGTATGTAAACTCACGTCTTAAAAACATCTGTAACATGTCTGTATAAAttagatgctttccagatcaatAATCTTGAACATAGGCTGCATACATGTGCTATCTGGGTCCATTTGTGTTTGCTTACGGTAGCATTAAAGACTTGAATATTGTCTTGTGTCTATTAACATTTCTGTATATCTGTCCGACAATAAAACGAAGCATTAACCTGA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0046539 histamine N-methyltransferase activity molecular_function

KEGG:

id description
K00546 HNMT; histamine N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101881 lncRNA upstream 157665 9255332 ~ 9412735 (+) True G68901
TU101878 lncRNA upstream 329013 9240938 ~ 9241387 (+) True G68900
TU101875 lncRNA upstream 376097 9180904 ~ 9194303 (+) True G68897
TU101872 lncRNA upstream 385832 9180751 ~ 9184568 (+) True G68896
TU101871 lncRNA upstream 391474 9176324 ~ 9178926 (+) True G68895
TU101892 lncRNA downstream 667 9575421 ~ 9575654 (+) True G68908
TU102047 lncRNA downstream 315897 9890651 ~ 9891580 (+) True G69003
TU102091 lncRNA downstream 480742 10055496 ~ 10056501 (+) True G69028
TU102094 lncRNA downstream 486304 10061058 ~ 10061611 (+) True G69031
TU102095 lncRNA downstream 486931 10061685 ~ 10061887 (+) True G69032
XM_043249639.1 mRNA upstream 3403 9443125 ~ 9566997 (+) True thsd7ba
XM_043249642.1 mRNA upstream 3403 9443125 ~ 9566997 (+) False thsd7ba
XM_043249641.1 mRNA upstream 3403 9443125 ~ 9566997 (+) False thsd7ba
XM_043249644.1 mRNA upstream 3403 9443125 ~ 9566997 (+) False thsd7ba
XM_043249643.1 mRNA upstream 6166 9443125 ~ 9564234 (+) False thsd7ba
XM_043248969.1 mRNA downstream 27232 9601986 ~ 9610746 (+) True spopla
XM_043248971.1 mRNA downstream 27232 9601986 ~ 9610746 (+) False spopla
XM_043248970.1 mRNA downstream 27232 9601986 ~ 9610746 (+) False spopla
XM_043249259.1 mRNA downstream 53860 9628614 ~ 9652625 (+) False LOC122351877
XM_043249260.1 mRNA downstream 57267 9632021 ~ 9652625 (+) False LOC122351877
XR_006251853.1 other upstream 13753 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 420734 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 420739 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 704503 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 1136917 8431145 ~ 8433483 (+) False sumo3b
XR_006251850.1 other downstream 753977 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 1908683 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2471745 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 3052781 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 3156082 12730836 ~ 12730962 (+) True LOC122352187

Expression Profile