RNA id: XM_043248074.1


Basic Information

Item Value
RNA id XM_043248074.1
length 5204
RNA type mRNA
GC content 0.46
exon number 9
gene id zeb2a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 12196754 ~ 12244788 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTTGGATGAAGGAGCGGAGCCCATGCGGACTGCTGCCATCTGACCCACTCTTATCAATGAAGCAGGAGATCATGGCGGAGGGTCCCCGGTGTAAGAGGAGAAAACAGGCCAACCCGAGGAGAAAGAACGTGCTGAGTTATGAAAATGTGGTGGATGCCGGTTCAGGGTCTGATGAGGAGGACAGACTCCTGGGTTCGGAGGGAGAAGGCAGTCCAGCAGGTGTACCGAGTCTGGAGGCCTCACCCCGGGTAGCCCATGCCCTGCTCTCCTGCCGGGGagatgaagaaaatgaaagccAGGATGGGGCAGGAGTCCATGTTTGGCGCCACGGAGACCTGAATGGTTCAGAGGAGCGAAAAGTGGAGTACAACTCCATGAGCCCAGACATCTCTCTCCATGGAATTGGAAATGGTACAGTTAAGGGTATCGATGCCTCTTCAGAGCTGGAAAGCTTCTTTGCCAAGAGGAAACTGGATGACAGTGAGGGACATGCAGCGAGCATTGCCGAATACCTACAGGATACCGTTATCATTTACCCAGAGGACCCAGAGGAGGGTACACGACTGGGCACACCAGAAGCCAACGGACAAGACGAAACTGAAAATGATCTGGCACTGAGGACGCCAGATGCCTTTGCCCAACTGTTGACCTGCCCCTACTGTGACCGGGGCTACAAGCGGCTGACCTCCCTAAAGGAGCACATCAAGTACCGACATGAGAAAAACGATGAGAGCTTCCCCTGTCCCCTGTGCAGTGACACCTTCGCCTACCGCACCCAGCTAGAGCGCCATATGGCCACACATAAGCCTGCCAGAGATCAGCCTCAGTTGCTAAACGAAGGGGCTGGCAACCGCAAATTTAAATGCACAGAGTGTGGCAAAGCTTTCAAATATAAGCATCATTTGAAGGAGCACCTCCGCATTCACAGTGgtgAAAAGCCATATGAGTGCTCCAATTGCAAGAAACGCTTCTCCCACTCTGGCTCCTATAGCTCCCACATAAGTAGCAAGAAGTGCATTGGCCTTATCTCTATTAATGGACGGGTACGCCATGGAGTCAACAGCAAGCCTGGCTCATCACCAAATTCTGCTGCATCCTCTCCTGGCAGTCCTGCCTTAGCTCAGCTCCGTCACAAACTGGAGAACGGCAGGTCCATGAGCCTCCAAGACCCATCTGCTCACCCAGACATCAAGTCAGAGCCCATGGACTTCAATGAATACCGTCTTATGATCGCATCTCAACAAGAATACGGTGGGTCAGGAGCCTTTCTCAATGGCGGTGGTCATGGAGGTAGTCCTCCAGGGATGCACGGTTCATCTCAGAACCACCCACAACATCTGGGCATTGGGTCAGATTCTCATCTGTTGAGCTATCCAGGCTTCCTCAACAACATGAGTGAGGTtcagaaggttcttcagattgtGGACAACACAGTTTGCCGGCAGAAGATGGATGGCAACCCTGAGGAGATCTCTAAGCTCAGAGCATACATGAAGGAATTAGGCTCCCAGATGGAGGAGCAGAATCGGGTACTGGCTTCTCAGCAAGGCTTCCTTGGTGTTGGTCACAACAGTCCCACCAAGACCATCATTGACTACACACTAGAAAAAGTCAATGAAGCCAAAGCATGTCTCCAGAGTTTAACAGAAGATTCAAAGAGACGGCCTGTTGATATCAAAAAAGAAAGACCCAGCCATGCCATGGATCTTCTATCTGAAGATAAAGCACAGGAGAGGGATGCGCAGTATGCACCATTCTCATGTCAGTACTGCAAGGAGACATTTTCTGGCCCTATTCCATTACATCAACACGAGCGATATCTCTGCAAGATGAATGAGGAGATCAAGGCTGTCCTTAAACCTAATGATACTATCCCAACTGGCCGCAGGGGATTTTTTGGCTCAGAGCAGCAGACTGGAGTGATCCCCTCATCTCTTGAGAGGAATGCCACCAGCCCAGTCAACCCCTACAAGGATCACATGTCAGTACTGAAAGCCCACAACACTGAGCACAACTCAGAAGAATTGAGGAAGATCTCCCTGGCGGTGGGTCTTCCTCAGGAGTTTGTGAAGGATTCgtttgtgcaatggaaagctCAATCTCATCATAACATCTCTAGGAAAAGATCTCCTCCCCCTGAACAAAGTGGAGAGGTCAACCATGGCTTGAGCAGAGAGTCAGCATTTGCCCGGTCACCCGTTTCACTAAGTCAATATGGTGACTCAACAGCAGAGAGCCAAGCCATTACCAATGGGGATTCAGGGCACAAGTTATCCAAACCGCACCATTTTAGGCAGACCAATGAAAAGCCGATTGACTCTGTGGACCACTTGAGAGGTGAGACACCCTCACCTTTGAAtctctcatcatcatcatccaaaCACTCACATAGCAGTTCGTACACCCCTAACAGCCTCGCTTCTGAGGATGCCCATGGAGAACCACTGGACTTGTCTTTGCCAAAACAAGTTTCCAAGGCAGAACGGAGGCCAAAACCAAATGGCTTTTCTGTTGACCACACTATCAACTCCTCTGCACGTGAACTAGGAACAGAGCCGTTAAATCTGGCCCACATAAAGAAGGAGTTCAATGGGCCCAACAGTTTGGGCAATGAAAATCAGCTGGAGAAAAGCTCAAGCCCTATCTTTAGCATAAACCCTTTTGGTGGCGGGCACATGTACACCTCGCTTCCTCCTCATGGAGCATTCCCTCCTCCTACTTTCATGTCTACAGCTCAAGCCAGCATCCCGGGACTCAGGCCCTACCCAGGGTTGGATCCCATGAGTTTCCTTCCACCTATGGCTTATACTTATGCGGCAGGAGCAGCTACTTTTGCTGAGATGCAGCAACGCCGAAAGTACCAGCGGAAACCAGGCTTCCAgGGGGAGCTACTGGACAGCGCAGGGGACTATCTGTCAGGGCTAGAGGACCTGACAGACAGCGAGTCGCTGCTCGCCCGGAAGAAGATTAAGAAGACTGAAAGTGGTATGTACGCGTGTGACTTGTGCGACAAAACATTCCAGAAGACCAGTTCCCTCCTAAGACACAAATATGAGCACACAGGAAAGCGGCCTCACCAGTGCCAGATTTGTAAGAAGGCCTTTAAACACAAGCACCACCTCATCGAGCACTCACGCCTACATTCAGGCGAGAAACCCTACCAGTGCGACAAATGTGGCAAGCGCTTCTCCCACTCTGGCTCTTACTCGCAGCACATGAACCATCGATATTCCTACTGCAAACGGGAGGCGGAGGAGCGTGAGGCCGCCAAACAAGATAACCACGACAATAGCGGACCCTTGGAGCCCACGGAGCTTCTCATGCGCCGGGCTTACCTTCAAGGCCTCGGGCCCCTGGGCTTTTCGGATCCAGAGGACCAGACAGAGGACATCACACGAGAAAACACCATCTTGAGAGATGGTTCTGAGGGCGGCACCAGGGAGGCAGAGGAGGCATATCCGGAAGTGACTGACAGGCAAGAGACAAGGTTGGCTGAAGAAGAGGAAATGGAGACTGAGGGGCAGAGATTTGACACTCGGAGCCCTGATGGGACAGCAAAAGTTGAGAAAGAGAGCGAATTAATGGGAGGGACAGAGGACGAGAGCTCAAAGGAGGGGAAGTTAGCGAGCAAAAAAATTCCTGACGGCGAGAACGAGGATGCTGATTAACTACTGCATTTCGGAATAAGCTTCCTGTATtctatgttttctttttccctcaAGCTTGCATCGCGCTCTTCTTCCACCCTTTTGAAGGGACTTTGAGCCAGATTCTCATTTGTACCACACTGCCACGTCTTGGTTATCTGAGCGTGCGCCTGAGGCTTGCACTCGCCGATATAAAGAGTGGAACTCCAAAATCAGGCATCAGAAACTAGGCTGGAACATGAAGGAATccatattatgcaaaaatacaagTGATAACGATTGtcagaataaaattaaaagaaaggtttttaaattgtacagaGTTCTCAGCCAGAAAGCTGTGCGGTGCTGATTTCCGTATAACTCCTGTGTTTCATTGTGGTCGTAGCACAAGCCTGGAAATTGCactctgaaaaaagaaaagtattagaaaaaaggaaaaacaaaaaaacacaaaaaacaaaatgaacaaaaaaactcttaggtaaaaaaaaaaaaagcattgcctATATGTACTTATACTGCGCTTGAAGACGCAGTAGTGTGTCAGTGTTATATTTCATTATCACTTACTGTGATACCCTTGGTTTTACCTTTCTTTTCCTGACCAGCCATCCAAGTTTTGGCGTCTCACCAtggcttttttttatgaagcaaCTTTAACTAAATAATACCTATATGATTCTTAAACGTACAAAGTCTTAAAGTTGGCCAGGGGTGGATGGAAAGAGTTTGGGTAACTGTAATGACGAAGGCTCATTGTATGAGGCGACGTCAGAACCCCTGTGTTTTTTTCGTTCGAGAAAAGCCTTATATGCAAACCCTTTCACCTGTGTTTTCTGCAAGTGCCATccttgtacagtataaagcgaAGTCAACTAGTGTTCTCTTTGCACCTGCTTtagtattaaacaaaatatttcaccTTGTCGTTTGAAATACCTACGTCAGTATTAGTATATCTAGACTGCAGTTGTTTAGTTTACATATTGTTTGTgcaattttctgtatttttttttttaagatcatcTGTCAGTATTatcttggtttgttttgttttgttcaatacaaaattcatttttattttaaactaccattttatttatgtgactcattttatatttcctaattatatttatttcatactgtAGTGTACAGTATTATAGTTCCttgatatagatatattttagtaaataaggATCCTTACAAGTGGAGCAAATTTTACGTAAAGAGAGCATTTATTGTATCTGGAGCGATTGCTGTGAATTGCTCTTCATACTACACTTACCTGATGAAGGAGAATCTACAATTTGGGAACTTTTGATACAATATTGTGaaaacactgtatttttgactgaaaggaaaaaaaaatattccactttattcatcttatttgtttttcctttttttcccttttttagcTACAGAAATAAAGGGGGGCTGTGGTTGTTGGGATTTTTTGAAATGTCTGTTgaagtataatttaatttttaatttgtaatttctcTTGAAAATGACCTTGCTCGAATAAATGTAGCccaatttaattttgaaa

Function

GO:

id name namespace
GO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0014029 neural crest formation biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060030 dorsal convergence biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102924 lncRNA downstream 40315 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA downstream 40315 12085714 ~ 12156439 (-) True G69596
XR_006251827.1 lncRNA downstream 242520 11790781 ~ 11954234 (-) True LOC122351998
TU102798 lncRNA downstream 703634 11396676 ~ 11493120 (-) False LOC122351858
TU102742 lncRNA downstream 830935 11358950 ~ 11365819 (-) True G69467
XR_006251707.1 lncRNA upstream 24779 12268112 ~ 12270147 (-) True LOC122351183
TU102946 lncRNA upstream 36460 12279793 ~ 12280197 (-) True G69607
XR_006251738.1 lncRNA upstream 60381 12303714 ~ 12321820 (-) True LOC122351337
TU102984 lncRNA upstream 148980 12392313 ~ 12393474 (-) True G69639
TU102985 lncRNA upstream 150764 12394097 ~ 12394329 (-) True G69640
XM_043248384.1 mRNA downstream 1793 12160502 ~ 12194961 (-) False gtdc1
XM_043248385.1 mRNA downstream 1847 12160502 ~ 12194907 (-) False gtdc1
XM_043248389.1 mRNA downstream 7102 12160502 ~ 12189652 (-) False gtdc1
XM_043248386.1 mRNA downstream 7103 12091131 ~ 12189651 (-) False gtdc1
XM_043248388.1 mRNA downstream 7103 12160502 ~ 12189651 (-) False gtdc1
XM_043248561.1 mRNA upstream 202219 12445552 ~ 12452338 (-) True itm2bb
XM_043249278.1 mRNA upstream 274951 12518284 ~ 12554050 (-) True lrch1
XM_043249281.1 mRNA upstream 274951 12518284 ~ 12553992 (-) False lrch1
XM_043249280.1 mRNA upstream 274951 12518284 ~ 12553989 (-) False lrch1
XM_043249279.1 mRNA upstream 274951 12518284 ~ 12553980 (-) False lrch1
XR_006251743.1 other downstream 7098 12166991 ~ 12189656 (-) True gtdc1
TU102802 other downstream 697382 11497010 ~ 11499372 (-) False LOC122351308
XR_006251823.1 other downstream 1510127 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 1677297 10515272 ~ 10519457 (-) False fdx1
XR_006251820.1 other downstream 1754882 10433507 ~ 10441872 (-) True trim13
TU102995 other upstream 179096 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 465298 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 494711 12738044 ~ 12738171 (-) True LOC122352189
TU103179 other upstream 741791 12985124 ~ 12985978 (-) True G69757
TU103524 other upstream 1229807 13473140 ~ 13495645 (-) False gypc

Expression Profile