RNA id: XM_043248084.1


Basic Information

Item Value
RNA id XM_043248084.1
length 2409
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC122351193
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3925891 ~ 3945608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACACTTAAACAAGAAATCGTTCATTCAAAGTCCCACAAAACTCCACCCCAAATCCATTCCTCAGGTACTCCATCCATCCTGTCACGGGTCTGACAGCTGTCAGTCACAGTGTGGAGCTGTTGGACATACATTATATGTGATGTATAGAGTGGTCTGTCTgcttctgtttgtctctcaggTGCCGTCAGAGAAGATCCTCCGGGCAGGTAAAGTGTTACGAAACACCATCCTGTCCCGAGCGCCTCAAATTATCAGAGACAGGAAGTACCACCTTAAAACATACAGgcagTGCTGCATGGGCACGGAGCTCGTTGATTGGCTGATGCAGCACACTTCCTGTGTTCACTCTCGTGTTCAGGCTGTAGGGATGTGGCAGGTGCTGCTGGAGGAGGGCGTCCTGAACCACGTGGACCAGGAGCTGAGTTTCCAAGATAAGTCTTTTTATCGTTTCCTGGAGGATGAGGCGGAGGACGCAGCCCTGcccactgaagaagagaagaaagacgATGAGGAACTACAGGACACCCTCCTGCTCCTCTCTCAGATCGGACCTGACGCCCATCTGCGAATGATCCTCAGTAAACAGCCTGGCCAGAGGACTGTAGATGACCTGGAGATCATTTATGAGGAGCTGCTGCATATTAAAGCCTTATCACATCTGTCCACGACTGTGAAGAGGGAACTCGCTGGTGTTCTGATATTCGAGTCCCACGCCAAAGCAGGCACAGTGTTGTTTAATCAAGGGGAGGAGGGCACGTCATGGTACATCATCCTGAAGGGCTCCGTCAACGTGGTGATCTATGGAAAGGGTGTAGTTTGCACGTTACACGAGGGAGATGACTTCGGGAAGCTGGCTCTGGTGAACGACGCACCTCGGGCAGCGTCGATCGTACTGAGAGAAGACAACTGCCACTTCCTGAGAGTGGATAAAGAAGACTTCAACAGGATCCTCAGGGATGTGGAAGCGAACACGGTCCGTCTGAAGGAACATGAGGAGGATGTGTTAGTTTTGGAGAAAACTAGCAACAGGGGCTCCAGTTCCTCTCCTCTCAAGTATACTGTGATGTCAGGGACCCCGGAGAAGATTCTGGAGCATCTTCTGGAGACGATGAAACTCGACTCCCAGTTCACTGAGTCAGATCCCGCTCTAGATGACTTTTTGCTTATGCACTGTGTGTTTGTCCCAAACAGTCAGCTGTGTCCTCTTCTCATGGCCCACTATCATGCTCAGCCGTCTCAGGGCAGCGACCAGGAGCGGATGGATTACTCTCTCAATAACAAGCGCCGGGTGATTCGTCTGGTCTTACAGTGGGCCTCCATCAACACAGACCACCTGCAGGAGGAGGACAGCTCTTTCAGCTTCCTCCAGGAGTTTTATGAGGCGGTGTGTGAAGACTCCAGACTCCTTCTAGCTCTGAAAGACCAGCTGCCCGAACTAGAGAAGATCATCAAGCAGAACTGTGATGAAGGCCGGCCCTCTCAGAAAAAGCACAAAGTCCTGCTTCGTCAGTTCAGCACAGGGAACGACAGACTGCAGAAGAGACAGCCAATCAAAAGCACGGACGAGAtcCTGTTTAAGGTGTACTGCGGTGATCATACCTACTCCACGATCCGAGTGCCTGTCGCTGCGTCTGTCAGAGAGGTCATCAGCGCCGTTACCGATAAACTGAGCTCAGGAGACGACCTTCTGCTCATCCACCTCAACTCAGCCGGGGataaagagCTTCTAAAGCCATCCGATGTGTCCATCTTCTCATCGCTGACCATTAATGGCCGTCTGTTTGTCTGCCCGAGGGACCAGATCGACTCTTTGACTCCGCTGCCGGAGCAGGAAGGGCCGTCTGCGGGCTCCATGACCACGTTTGAGCTCGCAGGCTCCAAAGATCTGGCTCATCAGATGACTCTCTACGACTGGGAGCTCTTCGACTGTGTACACGAGAGCGAGCTGATCTACCACACGTTTGGCCGTCAGCACTTCAAGAAGACCACGGCTAATCTGGATCTGTTCCTGCGGCGCTTTAATGAGGTTCAGCTGTGGGTGGTCACCGAGGTTTGTTTGTGTCCCGCGCTCGGCAAACGCGTCCAACTGCTCAAGAAGTTCATCAAGATCGCTGCGCACTGCAAAGAGTTTAAGAATTTGAACTCGTTCTTTGCCATTATCATGGGCCTGGGAAACCCTGCGGTCTGTCGACTCGGTCAGACATGGGAGAAACTGCCCAGCAAGTTCAAGAAGTTTTATGGAGAGTTTGAAAACCTGATGGATCCCTCCAGAAATCACCGAGCGTATCGACTTACAGTGGCCAAGTTAGAACCACCGATCATTCCCTTCATGCCTTTATTAATTAAAGagaatGATTGCAAACACGGTGAGAATCATGAGATACTGCCGGAGCCAGCCATTCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99748 lncRNA upstream 96119 3828991 ~ 3829772 (+) False G67448
TU99751 lncRNA upstream 96274 3828823 ~ 3829617 (+) True G67448
XR_006251706.1 lncRNA upstream 279277 3642961 ~ 3646614 (+) True LOC122351161
TU99708 lncRNA upstream 306585 3607394 ~ 3619306 (+) False LOC122351601
XR_006251781.1 lncRNA upstream 316391 3606570 ~ 3609500 (+) True LOC122351601
TU99905 lncRNA downstream 926 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA downstream 38561 3984169 ~ 3985934 (+) False cdca7a
TU99977 lncRNA downstream 92988 4038596 ~ 4038822 (+) True G67604
TU99979 lncRNA downstream 119029 4064637 ~ 4064961 (+) True G67606
TU100026 lncRNA downstream 211048 4156656 ~ 4157963 (+) True G67637
XM_043249752.1 mRNA upstream 3339 3913638 ~ 3922552 (+) False LOC122352174
XM_043248310.1 mRNA upstream 15071 3906741 ~ 3910820 (+) True LOC122351330
XM_043248311.1 mRNA upstream 15845 3906741 ~ 3910046 (+) False LOC122351330
XM_043248107.1 mRNA upstream 158354 3760833 ~ 3767537 (+) True stx19
XM_043248460.1 mRNA upstream 166676 3754816 ~ 3759215 (+) True rsph1
XM_043248533.1 mRNA downstream 2410 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA downstream 2412 3948020 ~ 3981211 (+) True zak
XM_043248534.1 mRNA downstream 35738 3981346 ~ 3985962 (+) True cdca7a
XM_043248594.1 mRNA downstream 164042 4109650 ~ 4112225 (+) True sp9
XM_043249288.1 mRNA downstream 174919 4120527 ~ 4127013 (+) False scrn3
XR_006251861.1 other upstream 3013 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 729370 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2196496 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2790902 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 3065735 858680 ~ 860156 (+) False LOC122351650
TU99912 other downstream 2428 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 35919 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 174919 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 195446 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 271442 4217050 ~ 4220395 (+) False G67630

Expression Profile