RNA id: XM_043248088.1


Basic Information

Item Value
RNA id XM_043248088.1
length 1872
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC122351196
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4992313 ~ 5006796 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attaactttaaattaaaaaaatctatttatcaCTATTACACTATGAGATGACGGCTTGTCTCTGGTTTTATCTGTGCACGTGCAAGAAGGTTCACGTCAAGCCCGCGCGCACGGTCGTATTTTCTTTGCGCGCAATAAATGAGCGCAGCGGACGCTTGTGGGTGAAGGAGAGGCTGTGCTGAGAGACGGTTAGCAGTCAGGTAGATGTTTGGAGGAGATGTCTCAGCAGTCGCTCGTGGGCTGACCGCTCGAGCGTCAAGGAATGCGCGAGAGGAGATGAAACCGAGCGACGCGAGACCTTTCCACCAGAGGACCGAGATTACAGGCTTGTCGTCGAGCTCTGCCGACAGAAGTTTCGTAAATGAAGATTTCTGCCGTTTTACACCTGGTTGCTGTCGCGGCTTTACTTCACTCCTGTTCTCACGTGTGTGCCGTTCCTCCAGAATGTGATCTAGACTTCATGCTACTCAGAGAGGAGGAAAACTGCTACAACATCATCTATCAAGAGAACCTGACAGAGACTGGGTCCACACGCACAGGCTGCAGTGCTTTATGGGATGATCTGAACTGTTGGCCTCATGCTGGAGTGGGAGAGACTGTGTCAAGGCCATGCCCCAATTTCCTtcgggtcaaagGAGCGGTGATGAAGAACTGCACTGAGAGCGGCTGGTCGGAAGTCTTTCCCCCGTATGAACTCGCCTGTGGCCATGGCCTCAACGACAGCTTTCAAACCCCAATCGACTTGGACGTCTCACAGGAGTATTTCTTTTATGTGAAGATTATGTATTCTGTGGGATACGCCATCTCTTTTGTGTCACTCAGCATTGCCCTTTCAGtgctgtgtgtgttcagGAAGCTGCACTGCACTCGCAATTTTATCCACATGCAGCTTTTTCTGTCCTTCATCCTGAGAgccatcttcatcttcatccgaGATGCCGCGCTGCATTACTCACAGGAGTACTACCACTGCAACTCCCATCCGCCTGGCTGTAAAGTGGCACTGTTCCTGTCTAATTACTGCATCCTGGCAAATTACAGCTGGCTGCTGGTGGAAGGACATTATCTGCACAGCCTCATTAACCTCTCACTGCGCTCACAGTCGAAACGCCTGCACTGGTACATCCTGCTTGGCTGGGGGATCCCGATGCTCATTATTATTAGCTGGAGTTTGGCCAAATACCTGCATCAGGATGAAGGATGCTGGGAGACGAGAGATCATGGCTGGATATGGTGGATACTGCGAGTACCAGTCATCATTTTCATCACAgtaaacatgctgttttttctGAGCATCATCCGGACGTTGGTGGCGAAAATGAAAGCCCCCGACATGCATGGAAACGAAATCAATCATCACAGgAAGCTGGCGAAATCTACGTTTCTCTTAGTGTCGCTGTTCGGCCTGCAGTATGTGCTCTTCGCCTTTTTCCCCGATAGAGTGAGCATGCTAACCTTCAAAATCTGGAATGTCATTGAGCTAGCGTTAGCATCCACGCAGGGGTTTATCGTGGCACTGCTGTACTGTTTTCTGAACGGAGAGGTGAGTGAATCAAAAAGAATTGAAATTCGAATCGAATTGTCTCAGGTTACGCTTTCCAGGGACTGGCCCGAGTTCAATGCATCACACATTTCCTGCGCATGTCAGACTCGCTCGTCGTTACCCGATCCCGCTCTAGGCACGAGGAGCAGGGAAATCGTAACGGCTACCGACCTTTAACTTTCCACAGGTGCAATACGAAGTCCAGAGACGATGGAGACGGTGGCGCCTGAAGCAGCGTTTCCATGGAGACCCCAGGGTGCATCACGGCTCTCTGAGTAACAGCGGCCTGCCGCTGACGCAGGTCTCCCTGCTCACGCGTCCCAGCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100349 lncRNA upstream 40526 4899485 ~ 4954081 (+) True G67826
TU100348 lncRNA upstream 40526 4915259 ~ 4954081 (+) False G67826
TU100322 lncRNA upstream 123725 4870185 ~ 4870882 (+) True G67812
TU100273 lncRNA upstream 170831 4823426 ~ 4823776 (+) True G67782
TU100248 lncRNA upstream 214072 4778357 ~ 4780535 (+) True G67769
TU100419 lncRNA downstream 298 5006890 ~ 5011437 (+) True G67867
TU100427 lncRNA downstream 15648 5022240 ~ 5025362 (+) True G67872
TU100434 lncRNA downstream 20121 5026713 ~ 5027025 (+) False LOC122351471
XR_006251744.1 lncRNA downstream 43858 5050450 ~ 5051912 (+) True LOC122351367
TU100439 lncRNA downstream 45135 5051727 ~ 5052148 (+) False LOC122351367
XM_043248519.1 mRNA upstream 141468 4840938 ~ 4853139 (+) True LOC122351440
XM_043248584.1 mRNA upstream 164741 4825378 ~ 4829866 (+) True cmklr2
XM_043248635.1 mRNA upstream 222393 4720555 ~ 4772214 (+) False osbpl6
XM_043248549.1 mRNA downstream 8878 5015470 ~ 5017196 (+) False c9h2orf76
XM_043248547.1 mRNA downstream 18971 5025563 ~ 5028639 (+) True LOC122351471
XM_043248060.1 mRNA downstream 51971 5058563 ~ 5059629 (+) True LOC122351173
XM_043249359.1 mRNA downstream 60231 5066823 ~ 5069325 (+) True c1ql2
XM_043249690.1 mRNA downstream 87650 5094242 ~ 5099376 (+) True marco
XR_006251862.1 other upstream 277374 4709053 ~ 4717233 (+) True rbm45
TU100144 other upstream 432005 4557143 ~ 4562602 (+) True G67717
TU100101 other upstream 581465 4410876 ~ 4413142 (+) False hoxd4a
TU100018 other upstream 772436 4141054 ~ 4222171 (+) True G67630
TU100423 other downstream 9041 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 133621 5140213 ~ 5142152 (+) False ndufb3
unassigned_transcript_1318 other downstream 398637 5405229 ~ 5405301 (+) True trnar-ccu_4
unassigned_transcript_1319 other downstream 399311 5405903 ~ 5405975 (+) True trnar-ccu_5
unassigned_transcript_1320 other downstream 400884 5407476 ~ 5407548 (+) True trnar-ccu_6

Expression Profile