RNA id: XM_043248102.1


Basic Information

Item Value
RNA id XM_043248102.1
length 1483
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC122351200
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10405983 ~ 10408038 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATCTGAAATCGATGATGGTAATAATGGCACAGGAGTCTCCGCAAAACGCTGCACAAACCAGACCGAAGAAAGTGCAAAATGACTGCTTGCTCTGTGGCAGGGAATTCTATCCCTCCAAAAGTAACAAGCACCGGCTGTTTCACGGACACAAGTCTGAAAACAAAACGGAGTACGCGGTCGTGTTGGAGGAATTAGTTGGCAAACTTCAGGACACGACTCTGGCCGTCTGTGGCATATGCAGGACTCTGCTGCTGAGGTACGATCGGGTGTCCAAAGACGCAGAACGGATAAAGTGGCTTATTAAAGATACGTGGAGGAAGATGAGAGAGAAACGATGCGCGGAGTCGACGCCTTCGATGGAGGtgaagaggagaagagaagtGATGGACACAGCAGCaagtgatgaagatgatgaccAAAACACTACACCCAGCTCCCTGCAGTTCACTGACAGCGCTGCAGCTAAGGAGAAACTCAAAACTGCGTTGAAACCATTGCAGGCGAAGTTGAAAATACTTCAGGACTTCCAAAAGACTTCGCTTCAAACCGCAGAACATATTAAGTTTCAGGCTCAGTACACAGAGGGACGGATCAAGGATGAGTTTGTCAAACTTCGCCAAAGTTTGAGCAACGATGAAGCAGCCAGGAAAAAAGCGctgagagaggaagaagagCAAAAGAGCCAGACACTGAGGAAGAAGATTGAGAGGATGAGCAAAGAGATGTCCTCTCTTTCTGCCACAATCATAGCTACAGAGGAGGAGATGAAAGCTGAAGGTGCCTTATTCCTACAGAACTATGATGCCACGCTGAAAAGAGTTTCCCAGTGTAAAGCACCGGATCCGGAGGACATTTCTGGAGTTCTGATCAACGTGCCGAAACACCTGAGCaacctgaagttcactgtgttACAGAAGATGCAGAAAGCTGTTGATTACACTcccgtgacctttgaccccaaCAGCGCTCACTGTAATCTCATCGTGTCTGAGGATCTGACCAGTGTGAGATACAGCGATGAGGAACAGACTCTTCCTGACAATCCGGAGCGCTTCGACATGTTTGCGTGTGTTCTGGGCTCAGAGGGCTTTGACTCTGGCTCTCGCTGCTGGGACGTCGAGGTCGGAGACAGTACAGGCTGGTTCCTCGGAGTGATGAGCGAATCTGCTCAGAGGAGGAATAAAATCTTCTCAAGGAGTGGAATCTGGCTGGTGGGTCATTTCTGTGGTGAATATAAAGCACACGAACCTCCACGATCTCCAGCTCTCCTCCCGGTGAAAGAGAAACTGCAGAGGATCAGAGTTCAGCTGCACTGGGACACTGGAAAGCTGTCCTTCTCTGACCCTCttactgacacacacatacactctttcacacacacctTCACTGAGACATTATTTCCGTTTTTCGGTGTTGGCTGTGACATTTCTCCTCTGCTCATCTTACCTGTAAATTCTTCAGTAAAAAAAGATTCACTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251805.1 lncRNA upstream 226603 10175048 ~ 10179380 (+) True LOC122351843
TU102130 lncRNA upstream 231200 10173283 ~ 10174783 (+) False si:dkey-100n23.5
TU102110 lncRNA upstream 297799 10107840 ~ 10108184 (+) True G69042
TU102106 lncRNA upstream 304266 10092350 ~ 10101717 (+) False piga
TU102183 lncRNA downstream 12444 10420482 ~ 10420692 (+) True G69089
TU102184 lncRNA downstream 14005 10422043 ~ 10422253 (+) True G69090
XR_006251822.1 lncRNA downstream 15176 10423214 ~ 10435142 (+) False LOC122351945
TU102185 lncRNA downstream 15277 10423315 ~ 10423577 (+) False LOC122351945
XR_006251821.1 lncRNA downstream 15952 10423990 ~ 10435142 (+) True LOC122351945
XM_043248100.1 mRNA upstream 488 10402345 ~ 10405495 (+) False LOC122351198
XM_043248099.1 mRNA upstream 495 10402350 ~ 10405488 (+) True LOC122351198
XM_043248101.1 mRNA upstream 511 10402358 ~ 10405472 (+) False LOC122351198
XM_043249611.1 mRNA upstream 10753 10328731 ~ 10395230 (+) True il1rapl1a
XM_043249612.1 mRNA upstream 10753 10328735 ~ 10395230 (+) False il1rapl1a
XM_043249379.1 mRNA downstream 3642 10411680 ~ 10415823 (+) True LOC122351943
XM_043249380.1 mRNA downstream 34032 10442070 ~ 10446473 (+) True spryd7b
XM_043249143.1 mRNA downstream 71384 10479422 ~ 10487305 (+) True cenpj
XM_043249144.1 mRNA downstream 98272 10506310 ~ 10515066 (+) True arhgap20
XM_043249145.1 mRNA downstream 98272 10506310 ~ 10515066 (+) False arhgap20
XR_006251850.1 other upstream 10753 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 849336 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1256317 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1256322 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1540086 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 1075399 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1638461 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 2219497 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 2322798 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 2324595 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile