RNA id: XM_043248107.1


Basic Information

Item Value
RNA id XM_043248107.1
length 3805
RNA type mRNA
GC content 0.42
exon number 2
gene id stx19
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3760833 ~ 3767537 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAACAGATGCCTAACTGTGACTGGGGGTGTGGTTTTAAACAGGCTGGACCAGATTTCCCAGGAGTCCttgttgtgtttctttaaaatatagtgCATAACTGGAGCAGGGGGAAAACTCACGCTAGCACATATTTGCGTTGCTGGGAGCTGAGGATATGCCAAAGGCTTCCTGAAGGCTTCAGCGGATCCAGCTCAGAGCTCACAAGTCCGGGGGATGAGCACAGAGTTCAAGTTAAAGAGCTCAAGATGAAGAAACATTCAACCACCCGGGGATTAAAAGAAACGCGAGGGTATGAGAAGCAGAGAAATTTTTACACACAGACAACGCTCAAATCTAAGAGAAAATCTGACCTGGTCCCTATCAAGGTCTTCTTCCCCTGCAGTCATGAAGGACCGCATGGAGGAGCTGCGTCAGCGGATGAAGGCCAGCGATAAGCCGGTGGATAACAACCCCTTCGgcgaggacgaggaggaggaggaggacatgGACCCGTCCTCGCTGATAGGCCTGCAGGCGGTGATCTTCGAGGCAGAGCCCGTCCTGGAGAACTTCTTAAAGGAGGCCCAGAGCGTTCGTGACGGCATCGAGGAGCTGAACTCTGAAGTCAGTAAGTTCAGCCAGCAGCAGAGGAACTTTGTGGCCACCATCAGGCGCCTCAGCATCATGAAAAAGGAGAGCAGCATGACGCGAGACATCAAGCTGTTGGCCGAGAGCCTGCATAAAAAGTTAGACGTGCTTTCCAAGCAGGCTAAGCAAACCGAGGCCGAGCTGGGTCCTGACGTCACCACGTCTCGTATCCAGAAGGCCCAGCACGCGGCCCTCTTTCGCCGGTTCCAGCAGGTAATGCGGCAACACAACGACGCCATCCTGAGCAAGCAGAGCAAATGCAAGCAGTTCATCATCCGGCAGCTGGAGGTGTCGGGCCGTGAGGTGTCCGAAGACGAGGTGGACAACATGATAGAGCAGGGCAAGTGGGAGATCTTCAATGAGAACATCATAGTGGATGCAAAGATCACCCGCACGCAGCTCTCAGAGATCGAGCAACGGCACAAAGAGCTCCTGAACCTGGAGAGCAACATGAAGGACCTGCGAGATCTCTTTCTAGACGTGTTCATGCTGGTGGAGGAGCAAGGCCACCAGATTGAGAACATACAAGCAAATGTGGAGAAGACTCAAGACTATGTAGCGGTCACGAAGGAGAAGTTCAAAAGGGCTGCCAGATATAAGAAGAAGAACCCTCTCAGAAGACTGTGCTGTTGTTGCTGTCCTTGGTTCAGATAGCATGGCAGGGCTTGGAAGAGTAAACCATGGGAACGTTGCTCATTTACTGTGCTCTCAAGTACCGAATACAAAAACTGCAGACATTGACCTCTGTCTGATGAagataaaaagcaaaagcaaaagcacTAAGCACTTTTGAgcaatattaaaacagaatatcttatattcagaaaataatattaatcagACTAACTCCACACAATCTTAAAAATTAAGGTTTCAGAAGGGGTTTTTTATAGCAATGCCAgttttggttccccaaagaacttTATCTGCCTTTTTCTTCAACACGGAAGAAGCCTATGGGTGAGACTTCCGGTTCGTTAAACGGTATGGAAAAATGACTAGGAGAATAACAGCTTCCTGTAAAGGGTAAAACAGTTTGTACTACAAACCAGTGTTTATAactaatacaatataatactaatataatattaataatataatacataaaaaaatatgctcGGATGAGACTGGAAACGACACCCATAGATTTGCAAATGGCCACGCCCATTTCTATGtcaagaaaaaggtggatagtgggcatttcttaaaagaaccaaTAAGGCTCCAAAAAATATCGCAGAGTCCGCACCACAACGATAAAGAGAAACGAAGTGGAACAACTTTTTCGAGCTGACGACACAAACattgccagccaatcagaacccATCCTGTTCGCACGAGCTCgagaatttaaagcggcagacGCACGTGCGCTCGAATGAACACGCTATCGTTTGCTGGCGTGGAAGCTAATGTCGTTGTTTGTATGGTtatcgttcttggtgtgaaGGGGGCTTTGGTGCGAAGAGCAGTTTAATAATCTAATTTCCACCGTAAAGAAGTTTTTGTTGAAAGAAAAGTTTCCTTTGGGTCAATGAATGTcaatgaagaacctttatttattttgtagctTTTAGCTGGGTGTTGACATGGAATACAAATGGCTATATAAAGATCGTACAAAGGCTtattatgttttgttaaatCACATAAGTTATGTAAGAGGCAATGAAAGGTAAACTTATGCATGTTGTTATTGTGGGAAAGGTGCACTATTTATTTAGTCTAAttgactttttcatttcagtattatttaacatttgtcattttaatgcattgtctGCTTTATGTCTTATATTTTCAAACAAAGGGCCTTTTGAAAGATTTCTGCAGTTCTACATGTATGGAGGAGTTTACACAACactgttttaacaaaaaaaaaatagtgaataCTTtattagttgtgcatttacacaATAATGACTTATTGTAGAtgtgaaaatgcaattttttttaaaattgcatttcaaattgcaaatatatgaaaatgataCAATCTACAAAAACGTGCAGTGCATCTAGATTTGCGAGCTGGTATTTTGAATGTTCAACACCAATTAGCAAAATGAACCGTTTTGTACAGATAAAAATAGCTGGACGTGGATGAGACCGGAAGCTAGAGCCGTAGACTTTACACGTGGCTGCGTCCATTTTGACGTCGAGAAAAAGGTGCATAGTATGAATGAAATTCGGGTGTATCATATCCGCCATGTTGTGACTTTCGGACGATGAACTACATTTCGTGCGTTAGCTGCATTTCTTATACTGCTATTCATGAATCCTCTCCCTTGGCCTCATACTCCAGAATCCAGCGGTAAAAAGTaggtaataaattatttttttacgatAATAACGGTGTCATGTAAATGCCCCCCATAAAGCTGGGGTCACATTATTAATCCACAATTTCAATTTAGACCTTAGTTTTAGAGACTCCATGTTGAATTTAATGTGCATGAAAATAAGGCTGTGAAGGATAGCAGGTTTTTAAAGCGACCGATGCACACTTTATAAACTCACACACCATGAGTGCTATCAGGCATGTATCATTGAACTGATGGACATTTCTACAGTGTGAGCGCACTTTAATTCGGATGAAGTAGGCTAGTGATAGGCCCACAAAGATATGAGTAACCATTTTAAGAGGCCTAATATTTGCTCACAGTTAATAAGCCTTTACCGTGGAGGTAATTAGAATGAAACTGGCTGGTCTCATGATGGGGTAAATAATGAAGACATGTGGTGAGTCAACAGAGGTGTCAGGTGTTGGCACAGTTTCTAGGATCtgggtgtgtctgtgttttcagaGGAAGACGTGTTGCTAGAAAGTAAAGGTGAAGAATATTATCAGGACGTGCAGTGCAGTCAGAACAGTGCATTTGTGTTCACAAGGGTTCACGGTTTTTATTTGACCAGTGAATTAGCCTCTTAGCTTTTTAACTGTGTCGAATTTcgattgcatttttatttaatgcataaagcTCTATGAAACGGTACAGAACTGAGCATAAGCATTTATAGCCCACTGACTACAGAAACACAGCTTTTGTAAAGATCTTTTAAAGATGCAGTGTTTCCCGTGACGAGGCCCTgtgatcataaaataaatatataaatgtgtcgATATTCCAAAAACGAATATTCGGATGTTATTAAAGCTTGAAACGCTTCCTAAA

Function

GO: NA

KEGG:

id description
K08487 STX11; syntaxin 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251706.1 lncRNA upstream 114219 3642961 ~ 3646614 (+) True LOC122351161
TU99699 lncRNA upstream 122751 3601318 ~ 3638082 (+) False G67418
TU99751 lncRNA downstream 61286 3828823 ~ 3829617 (+) True G67448
TU99748 lncRNA downstream 61454 3828991 ~ 3829772 (+) False G67448
TU99905 lncRNA downstream 178997 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA downstream 216632 3984169 ~ 3985934 (+) False cdca7a
TU99977 lncRNA downstream 271059 4038596 ~ 4038822 (+) True G67604
XM_043248460.1 mRNA upstream 1618 3754816 ~ 3759215 (+) True rsph1
XM_043248457.1 mRNA upstream 8210 3744006 ~ 3752623 (+) True fbxl3a
XM_043248440.1 mRNA upstream 18094 3670562 ~ 3742739 (+) False mycbp2
XM_043248310.1 mRNA downstream 139204 3906741 ~ 3910820 (+) True LOC122351330
XM_043248311.1 mRNA downstream 139204 3906741 ~ 3910046 (+) False LOC122351330
XM_043249752.1 mRNA downstream 146101 3913638 ~ 3922552 (+) False LOC122352174
XM_043248084.1 mRNA downstream 158354 3925891 ~ 3945608 (+) True LOC122351193
XM_043248533.1 mRNA downstream 180481 3948018 ~ 3981211 (+) False zak
TU99551 other upstream 564312 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2031438 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2625844 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 2900677 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 2955824 797133 ~ 805009 (+) True G66727
XR_006251861.1 other downstream 146101 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 180499 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 213990 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 352990 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 373517 4141054 ~ 4222171 (+) True G67630

Expression Profile