RNA id: XM_043248125.1


Basic Information

Item Value
RNA id XM_043248125.1
length 1222
RNA type mRNA
GC content 0.41
exon number 7
gene id pttg1ipb
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8427846 ~ 8430614 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCCGGTCCCTCCGGCAAACACATGACCAGCCAGGCCTGAGAGCAGCACAGATCCGCCGCGCTTGCCATCATGATCCGGACTCGGATTCTTTCACTCGTTGCTTTGGTTTTCTTTGCCTTCTGTTTTGTAATAGCGGCTGGTCAGACGACGAGTCCAGAAACAAACTGCTCTGTAAGATCCAACACAACTTGTGAAGAATGTCTGAAGATTGTTTCAtgCTTGTGGTGCATCTCAAGCCAGAAATGCATTGACTATCCGGTGAAAAGCATTTTGCCCGCTCACAGTGTTTGTCCGCTCTCAGAAGCACGATGGGGAGTGTGCTGGATGAATTTTCAGACTCTCATCATTACCATCTCTGTGATCGCGGGGGTCATCATCATCGCCATATTTGTctgctgcttctgctgctgtaaatgtgaaaacatCGGGTCTAAAAGGAGTGAGGAGCGAATGGAGAGACAAGCTCACCTGAGAAAGTTCCGCCAAGAGGAGAGgAAAGCAGAGATGAGGCAGAGACATGAAGAAATGCGATTGAAATACGGTTTGAAAGCGGATAACCCATACTCTAGATTTGAGAACAGCTAGGAAGCTTGTGACGCTCCGCTGTTGTCTTTTCTTTTACCTCGCTCCTATTGTAAAAatgaacatgcacacacagcaCTCCATTTTTCTTTGAGTTTGAAAGACGCGCTATACTAGTTAGCAGCTGGCCACGCAAATATACTTTGCCTTTCGcttgaaatttaaatgtaacaccTGGATATTCAATGAATCTTCAAGCAAACCACATTTAGATGCATTCATGAAGCCTTGTAAATATAGTACGTTGATGATCCGAACAAGCTTCGACCAAGTTAAGTAAAACACACTGATATTTGAGACTTCATTGGACTTTGCCTGTTTCTGGCTAAGTTGCACGGCagtgaaataattttttgtttttaacctcTGCAAATTTTTAGCTGTGTAGctttttactcaaaataaactaggcataaatataaaaatgtgcttttgtaaaTTCCTACAGTTTTCAGATTGACAGATTGATTTGTGTCTGCCTTCGCTAGTTAAACAAATTACACTGAAATTTTAATCTgtcgcaatttttttttcatgttttgattAAGAGCTTATTGTATTTGCCAAAGGGTTGATCGGTGCAATTTACAGAAGTCAAATAAACTGTGAGAGAGATATCAATAAAAGTGAATgttgta

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101562 lncRNA upstream 205029 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 221883 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 573568 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 1091487 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 1126351 7298033 ~ 7301495 (+) False G68397
TU101678 lncRNA downstream 72142 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 170110 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 395598 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 428859 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 436525 8867139 ~ 8868277 (+) False fev
XM_043248896.1 mRNA upstream 917 8366662 ~ 8426929 (+) True myo10l3
XM_043248897.1 mRNA upstream 917 8366662 ~ 8426929 (+) False myo10l3
XM_043249059.1 mRNA upstream 78321 8343222 ~ 8349525 (+) True ankzf1
XM_043249064.1 mRNA upstream 85095 8341295 ~ 8342751 (+) True si:ch211-167j6.3
XM_043249065.1 mRNA upstream 85095 8341295 ~ 8342751 (+) False si:ch211-167j6.3
XM_043249725.1 mRNA downstream 497 8431111 ~ 8433483 (+) True sumo3b
XM_043248312.1 mRNA downstream 11746 8442360 ~ 8452673 (+) True tspearb
XM_043249452.1 mRNA downstream 22990 8453604 ~ 8458818 (+) False tra2b
XM_043249453.1 mRNA downstream 22990 8453604 ~ 8458804 (+) False tra2b
XM_043249449.1 mRNA downstream 22991 8453605 ~ 8459325 (+) False tra2b
TU101608 other upstream 85167 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2462966 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2542093 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2970317 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 2970583 5457191 ~ 5457263 (+) True trnar-ccu_65
TU101615 other downstream 531 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 434035 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 711978 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 711978 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 1012511 9443125 ~ 9556647 (+) False thsd7ba

Expression Profile