RNA id: XM_043248139.1



Basic Information


Item Value
RNA id XM_043248139.1
length 1109
RNA type mRNA
GC content 0.39
exon number 7
gene id spc25
representative False

Chromosome Information


Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24529672 ~ 24533048 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGTTTCCTGCTAAACTGAATTACTATGGCGTCCATCAGAGACTATAATGTGGTGGAGCAGTTTAACAGCAGACTGGAGGAGATCAGGGCTAAACTGCTGGATCAGGCCATGGGAGAGACACTCAATGACAGGGTGGCAGAGCTCTGTCAGGAACACAGGCAGTACATGAAGTCTGTCTTGGGTActtgttttaagaaatgcaaGGAGGACGAAACCATTTTTGACATGATAAAGACGTACAAAGAAGatttgaaAGAGAAAACATCTTCACTGAAAGAGAAAAGCGCCGAACATCTTGAGGTTGTGTCTGAGATCGAAGACAAAGAGCATCACAAAGCGCTTTTATTCCAGAGGATTGAGAAGCTCAAGAAGGATCAGGCCAAAAACAGGGACCtGATTCAGTCACAAAATAAAGCCAACAAGGACAGACTGAAGAAGCTGAACAAATGTAAAGACATCTTTCAGAAGCACCTCAGTCTTGAGATCAGAAAAACCCAAGGCGAGAAGCTGCAGTTTGTCTTCAGGAACGTCAGTCATAAAGATCCAGACATGGTCCACACCTTCCTCCTGCAGCTCGACGCAGAGGGCGTTTACCACATCATCTCCTGTGACCCTCCTCTGGAGAAAATGGCACATCTAGAGCGCAGACTGCAGGAGACCAACAACTTCTCTGCTTTTCTTGCTAACATCCGGAGAGAGTTTGTGGCGCTTCACAGCTGTGTAAAGACAGCctgattgtctttttttttttttttttttttttttattattattatttttttcatttcaaatgcatttaaaacaaacagtcAGAAACCCAGACGCCATATTTACAGACATTATCAGCACATAAATCGATCTTTTATTTACCTAAACCATCGGTAGTTACtcaatatgaaatatgtaatCGTTTCAGTTCttaatttttaacagtaaaCCTTTTATACAAGTCATAAAAAAACTCTTAAAGTGCTTTACAATTTCTTAGTTTTATACTACAGTGTCTAAAACGTATGCGTTTCATTACGTAAATTtctttttcacaataaaattcTAACAGTGGATTTCATTTGTAGACCTCCtttcatgaaataaaaccaaaacgcACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108125 lncRNA downstream 8364 24513094 ~ 24521308 (-) True G73077
TU108005 lncRNA downstream 243982 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA downstream 245507 24281991 ~ 24284165 (-) True G72984
TU107925 lncRNA downstream 548434 23926223 ~ 23981238 (-) False G72929
TU108133 lncRNA upstream 32103 24564881 ~ 24571112 (-) True G73084
TU108266 lncRNA upstream 206548 24739326 ~ 24745938 (-) True G73160
TU108285 lncRNA upstream 243382 24776160 ~ 24778655 (-) True G73175
TU108295 lncRNA upstream 268260 24801038 ~ 24801377 (-) True G73179
XR_006251791.1 lncRNA upstream 279538 24812316 ~ 24820878 (-) True LOC122351686
XM_043249564.1 mRNA downstream 47585 24425526 ~ 24482087 (-) True stk39
XM_043249607.1 mRNA downstream 335870 24142666 ~ 24193802 (-) True csrnp3
XM_043248992.1 mRNA downstream 491542 24029509 ~ 24038130 (-) True slc38a11
XM_043248991.1 mRNA downstream 518811 23981972 ~ 24010861 (-) False cobll1b
XM_043249351.1 mRNA upstream 1099 24533877 ~ 24558743 (-) False abcb11a
XM_043249350.1 mRNA upstream 1099 24533877 ~ 24558743 (-) True abcb11a
XM_043249352.1 mRNA upstream 1099 24533877 ~ 24558741 (-) False abcb11a
XM_043248836.1 mRNA upstream 39084 24571862 ~ 24667167 (-) True lrp2a
XM_043249293.1 mRNA upstream 184832 24717610 ~ 24727730 (-) True fastkd1
TU108001 other downstream 248964 24220522 ~ 24280708 (-) False G72978
TU108002 other downstream 248964 24231235 ~ 24280708 (-) False G72978
TU108000 other downstream 248964 24271455 ~ 24280708 (-) True G72978
TU107931 other downstream 569347 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 598343 23930207 ~ 23931329 (-) True G72930
TU108324 other upstream 494807 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 816000 25348778 ~ 25349640 (-) True G73301
TU108462 other upstream 923636 25456414 ~ 25458742 (-) True G73300
TU108524 other upstream 1257739 25790517 ~ 25793056 (-) True G73347
TU108525 other upstream 1261305 25794083 ~ 25832356 (-) False LOC122351758

Expression Profile