RNA id: XM_043248143.1


Basic Information

Item Value
RNA id XM_043248143.1
length 3508
RNA type mRNA
GC content 0.45
exon number 18
gene id rbm44
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13961757 ~ 13972062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCAGTCACAAGTCGTCAGCAACTAATAACATCTCTGTGAGCGTTAAAACTGGCTGGTTAAAATCGTCgggttaaaaacaacacaaatgagAGTAATTGTTTACTCTTCGTGTGGCATTTTCATGTAAATTGCACGCGTAGCTGGTgccagtttattaataaatcgcTCAGCTGCAGCGCCTAACGTTACACATTAACAACAGGGCGCTTACCTGAGGTGGACAGGCCCTGTTTCTAGTTTTGTCATCGATGATAACTGTTGCGAAAATATTCTAAAGGTCCCTTTTTCTTGAATGTGGTCGAACATGTGGTACCCTCAACCTCTCGTCGTACCGTTACCGTTCGTCTTTGAGTCATATTCAGTAACATATGAGGATGTTTCTGCCAGAGCCACGAGGCCAGTCATTCAACCTGACCAACGCGCGTATACTGCAGTGAACGAGAATAATGGCTTTTACAATGGTCCCCTGTACACCCATGATGAAAGGAGATTTGTGTTGATGAGGTCACTGTTCGAGCTCGTCTTGGCCAATGAATACCTGGAGCTCACAGATACAAAGTTTCTTAGATGGTTTCTGTGTTTAACAGCAGATGAcagaactttaattaaaaAAGAGGGAGGGCTTCAGCCATTTTTACAGAAACACCCGTTACTTCAAGTAGACAGACAGCATGTTTATGTGAAAGGTACAGTTTACAGAGGCAACTGCATTCCTCCTGCAACAACCATGTCATCAAATAAGTACCCATCATTTTATGGTGCATGCCAGTGTCAGAATTGTGCAACGATTTGTCCACTTGGTTCTAAGAAGTGCAGAAGTTGTGGCTTTCACATTGAGATTTCAGAAGACAAAGTCTGTGTGCCAGAGAATGAGAAACAACTTGAGCTGCTACCAAACTCTGTGAAAGAGGAGCTGAACATCTCAACTGCCCGAAGTGACACAACTGTTGGTTACACGCAGAGCACTTTTAATACTCAGAAAACAAGATGCACGCAGAGCTATGATTATGGAGGCCCTGTTGCACATTCTCCTTCATGCAGTAAAGGGATGTGTCCTCATGCCCAGTGCCTGTCTGAGTTGTGGGAGGAAGTAAAGAAGAGGGAGGACACCAAACACTTCAAGGACACAACAACCCAGGCAAATTTCTCCCTCGATACGGAGTTGGACATGCAGATTCAGGTTCAGATGAATGACTATACCCAAAATTGCCAAGACCAATCTTATGTACAAGTGAAAAAAGCTGATTACTACAATCTGGATCAAGAAGCAATGGcagaatattacagttttagtGACACTAGCTTAGACCATACAGAATGGAGCGTTGGCACTCGGAGTATGGAGGCAGCCTACAATGATTCAGTCATGGCCACCAAAGGCAGTACAGAACTATCAGATGAACCATCAAATGCCACCATGGCCACTGCTGCAAACTCTGATTGCTTCTCTTGCCTTGGCAGTTCTTTTGAGCTGGAAAATGAGTCAGGAGACCATCAAGAAGACATGAGAAAGAAGCGTGAACCAGTATATGAGCAGCAGACTGAGGAGATCAATGTTGGACCTTCACTGAAATCCAAATGTGGTGCTTCAGTTTCTGTGGACCAGATAATAGATGCCTGTGGTGATTTTAGAAGCTGTTTCACATCTACATGTGCAACCGAGGTTGTTCAGATCttccaaatgaaaaatgttgccACTGATACAGACTTGCTAGCTGTCGGTCATGagaaaaatacacagactgtACAAATTGCCACATCTGAAAAGAACACCATTACTGAAGTCTGCATGTCTGATTTAGATGTCCTCACAGAGGAATTTATAAATCTAAAGGAGACAGCGAATGAGCAACTGAAGAGCAGGAAGGCAGAAAgTCCTGGTGGAGGTCACTGCAGGAGAGTTTGTGGAAGTGACTGTGCCCAGCGAGTGAGAAGAGCAGAGCTGCGTCTTCTCGCTCTTCAGTTTGTCATGTGTCAGCAGCACTGCTGGAGACGCTACTTAACCTCCCCACTGGGTGAAAGTGCTCTTTGGGGGACCGACGGCCTGCCAGGTGGTGTAGCAGAAACACTTAATACACTACAGAAAGATTACTATGAGATGAGGAAACAGATTCTAGCAGGCACTCCTCTAGATAACCTTAAGCCCCTGTCAGTAGACTCTGACAAGATAACTACAAGGCCAAACTACAGCCCAGCGCTGGTGCTTGAGGCCCATTTAAACTCATTTGACTGTTCAGGAAGaaCCATTGCAAGTGGCCACCGAGTGGATGATGAAAACAAAGAGAGGGCACTGAGCACTGAAGTTTGTCAGGACACTGAAGCTGCTTTGGATGACACAGAAGGTGATGGCAACGAGCAAGATAGAGCTCTGGTCTTTTCCACCAAGTCTCCGGGAGCTTTTCAGAAGAACCCTGGTGTCATCAAGGATCCGAACAGCAGTGAGGCTTGGTTTGATGCCGAAGAGGAACTTAGGTCTCTATATCTGGATGGAAAAATGGAGAAACTGAATGAAAGCAAAGAAAGGACTGATGAAGATGAATCAAACCACAGTTCCCTCTTGTGCATTACAAGCTTGCCTGGCAGTATCACTGAGCATGAAGTGCTGCTTTGGTTTGATAAGTACAATGCCACCAATGTCTGCATCTCTACTTTCAGCAACAATATGAGAGCAGCTATTGTTTATCTCAAGAGCCCTAGCGACGCCAAGGCAGCAGCTAAAGACCTACAGGGGTGCTCCCTCCAAGGCCACACTATTCAGGTGGTGCAGCTTCATGGGCCTGCCTCAGCTTATCCTAAACTGATCAGTGATCAGCCCCACAGCACCTCAAAAACCCATAAAAAAGAACCTGACGGCGATGGACTGAAAGGGAAGGGTTTAACCTACAGTTCTTCACGTGGAGGGCCGCGCTGCAGTGTGGACAGGTTAACCAATGTCTGCGACTCGCCCACAGCCTCTGGCACCTGCATGCCAAAGCACTACGCCACCATGGGAAGCTTTGAGACAATCATGGCCCAGCTGTCGGAGCGCCACCCAAACGTAGGCCGCCAGAGGATCGTTGATGCCCTCCTGGAACTGCGGGCCAAGCATCAGGGCTTCCTCTGTGGGCTTCCTTTGAGATCTATAGTGGAAATGACTTCTGAGCTTCTAACACAGGCGTCTGCTCCGACATATATTTGAGTTGGTACTAAGCAGCAGTAAAGGCCTTATAAATAGTTCCCTGACCAGTATGACTggatttcagttcagtttcagttcagttttttccAACTAACTAATGCTATCTACAGCCATTTcgttttaattcattaatcagcACTTCTTTCTCCtggaaatgttattttggaTTCTTTTTAGGTTTTCATCATTGCTGTTATCAGTTATGCTAAGTGCATATGAAAGTTTCCTTGTGTTTGCCGAATAAAACTTCATGTTCCTGTGTTTCCTGTAATGATTTGATGAGTGCAAGCCCAGGCGCAGTGTAGAGCTGCACATTTCAAATGCGTCT

Function

GO: NA

KEGG:

id description
K25080 RBM44; RNA-binding protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104012 lncRNA downstream 36921 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 37653 13923749 ~ 13924104 (-) True G70308
TU103897 lncRNA downstream 49904 13881750 ~ 13911853 (-) False rif1
XR_006251857.1 lncRNA upstream 201755 14173817 ~ 14189001 (-) True LOC122352120
TU104049 lncRNA upstream 272225 14244287 ~ 14247328 (-) True G70332
TU104075 lncRNA upstream 390977 14363039 ~ 14372674 (-) False LOC122351495
TU104117 lncRNA upstream 505270 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 617796 14589858 ~ 14590275 (-) True G70393
XM_043248526.1 mRNA downstream 660 13925913 ~ 13961097 (-) True itgb5
XM_043248404.1 mRNA downstream 40160 13913874 ~ 13921597 (-) True tnfaip6
XM_043248863.1 mRNA downstream 48814 13895771 ~ 13912943 (-) False rif1
XM_043249528.1 mRNA downstream 137972 13821399 ~ 13823785 (-) True tsn
XM_043248470.1 mRNA downstream 174629 13783785 ~ 13787128 (-) True eaf2
XM_043248408.1 mRNA upstream 1985 13974047 ~ 13985162 (-) True etv5a
XM_043248409.1 mRNA upstream 1985 13974047 ~ 13985161 (-) False etv5a
XM_043248406.1 mRNA upstream 12953 13985015 ~ 14086771 (-) False LOC122351370
XM_043248407.1 mRNA upstream 12953 13985015 ~ 14073809 (-) False LOC122351370
XM_043248405.1 mRNA upstream 12953 13985015 ~ 14073809 (-) True LOC122351370
TU103993 other downstream 21889 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 148430 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 466112 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 466112 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 975779 12985124 ~ 12985978 (-) True G69757
TU104031 other upstream 224417 14196479 ~ 14253776 (-) True G70317
TU104362 other upstream 1331041 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1417787 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1799359 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2845078 16817140 ~ 16823694 (-) False G70986

Expression Profile