RNA id: XM_043248145.1


Basic Information

Item Value
RNA id XM_043248145.1
length 3041
RNA type mRNA
GC content 0.41
exon number 8
gene id sgo2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14208147 ~ 14212935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaataaattcaagGCATTTTTACTGGTCCGTCGAGGTTCTGTAAGGTTGTCCAATTACAGACTTCGTCCAGTAGATAGCGATACTTCAACACTTGATTCTGCGAACGCTTTTAAAAACGAGAGAAGAAGAATTTTAAGATTTCGCGGAAATGTTTGGTTTTAAATAAGTAGAAACCGACTTCATTTGTAAGCTCATCGTTTATTGTCTGcgtagaaatgcattttaacaagtATAAAGATAAACACCATCAAGAGTCGAGTTTGTCGTTATCTTTTATTAATGCTCCCAATGATAAAACGCTGACAGCGGCgtctaaagagaaaaaagaaaacataagaATGGGCAAACAGACGGCAGCTGTGTACGCAGCAAAGATAAAGACCAAAATACACAATACCTCATCATTCTTCAAGCTTTCTTTGAAAAGCAACAACAAGGCCCTGGCTCTGGCTCTTGTTGCTCAAAAGCAGAAGAGCAGAGAGCTGGAGGCAGAGGTGATGCGACTGAGGAAAGATGCGCAGTCAACTCATTTTGATCTTGCTCATCAGCgtcataaaaacaaagaacTGTTTGGCATTATACGAGAGGTTTATAATTCTTCCCTAAACTGGATGGCAAAGGCAGTTGACATTTTCTGTAATGATGAGgaTCCAGTCAGCATGGACTCAGAAGACAATGCCAGTGAAGaccAAATCATTGAAACGGGAGAGGTTGAGAGTTTGCGAGACAGACATTTGTGTCCACGGCAGGACCATGCTCATTCTGAACCGGTGAATTCAGCCAAGGATGCTCCCagccaagagagagaaaacaccaTATATGACTCTGAAATGGAGATGACCGTTAGTGACAGTGCTGCTGAAATAGTAACAGTTGAAACAAATCCCAGAAAAACCTCTACAGTTACAGAAGAACAGCATAAAAAGAAGGATTTGAGTCTATCGGAAAAAGGTAGTGAGGTTATATATGCAAATGAAGGCTCACCGATTGAATGTAGTAGATTAAAATATACAGCAGCTGTGCCAAAAGAGATAACCACTGTCACACAGCAGTGCTCTCCCAGTTTTCAGAGCGAGGTGGAGATCAGGCAGCAATTGGGATCAATAACTGCAAGGAGAAAGACTCATGTCACCGCTCATTGTAATAAAAGTAGCAGACGTACATGTAAACTGAAAGAACCAGATCCAAGAAAAACATATCTGATCTCCCAGGAACTTCCTAATGACATTTTTGATGATTGTTTCAGTGATTTCGAGCTTCTGAACTCTGAAAGAAGCAGGGCATTGCTTTcacatgaaaatatttcaaataaagctgCTAAAAGCAAAGCTAAAGAGTCCCATGCTACGCGGGAAACTAGAAGAACAATGATAGTTCAAGATGAGCTAAGACCTCAAAAGAGCAGGAAGACCAAAGTCTTGTCCCTTATGATGGAACACCGTTTATTGGATATGCATGAAAATGTTCAGTCTGCCAGTACTTTATGCCCAGAGACTGCTTGCACGGATGTCCGTGTCAGTGAGACTGTagttcaaaaacataaaaacaaaactccaGCACGCTCAAATTCTCAGTCTGGAGCGCCCCATGTGCAGAAAAACAGAGGAACATTTGTGATAAAGACAAATCAATTATTAATCAATGAggattcatttttgaatgaaaccaATATACTGGAAGATCCCAACAGACCGGAAGTAATATCAGAAACCCAAATGTCAGCTCTCCGTATTGGTTCAGATAATGTTGCACAACAGCACAAGGAGCCAGCGCATGGATTTCATGAGATATTGACAGAAAACGCCCATCATCCAGAATGTTCACAAGATGTGAACGGCAGCCTTGTACAGGAACCCTCTGAAATTATATCATCAGTGGCCGGTAAAgccaaaaaacacagaaaagaggggacagataaaataaaaaggaaaaattccGCACCAAGAGAAAAACCCAAAgcattaacaaagaaaaaaaacagttgtgttgtgAGTGTGGATGAAACGGTGTTGACTAAAAGGCAAGATGAGACTGATCTTCAGAATGGAGCAGGATGCAGGTCTTTGTCTAATACCTTACAGCTgccagtaatgtcttattgCTCAGCCTCAAAGGAAGACCTGACGGACACACATGATGCTGAAACCCTTGGAATAAATTCCCCTGCCTCTGCTGACGAGTTCGATCAGACTGACCATGTCAACGCGCACGTGAATCTGGATCAAATCAACCAGGCTCTTGAGGGCAGGTGCAGGAAAACATACGTTGTTTCATCTAGTCACGACTCACCCCTTAAGGAAAAGACAGACAGTGGTGCTTCCAGCGACATTTCTGAACGTGATCTTTTTTCTAGTGACACAGATAATGTTTCACCTGTAGTAAACAGAAGCATGTTTGTCATGGAAAAATACTATGTGTCTTCAGATGGTTTTAGTGGACACACAAAAGACCTTCAATTCACAGAAGAGAGGCCTCCCTGGGAGACCATTGACTGTTACACTGAAGCACTCTTAGATGAAAGTTCTGCCTACAGCCCTCAAGCAGAGAGTCGCTGTCAAACTTTGAACATTTACCAGGACCAGGACTCAGACATGAGTCACCAAGCACCAGAAGAAGGCAGGGTTATGAAGAGTCTAACAAATACAGAGTCTAACTCTGATTGCGGGAGAACACGAAGAAGAGCCGCACCAGTCTCCTACAAAGAGCCAACCCTCAACTGcaaaatgAGGCGAGGGGACAAATACTCGGATACAAAGTTCCTTAACTCTCCTGTgtttaaagacaaaaagaagaaaaaacgagTTTAGGAGTGACTTTCCCATTTATTGATTCCtttggtttttttacattttatttagttttatgtcttttttatgtaatgcagATGTTTAAGATGGGTTTTAAAGTTATCgtttttaatcaaaactgttaccttggcttttttttattcttatgtgtgtgtatagaaaatattgtttcaagttatatgtattttattggtTAATAAAGAGAACCTGctctattttcttttattgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251857.1 lncRNA downstream 19146 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 283311 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 284043 13923749 ~ 13924104 (-) True G70308
TU103893 lncRNA downstream 312687 13891346 ~ 13895460 (-) False rif1
TU104049 lncRNA upstream 31352 14244287 ~ 14247328 (-) True G70332
TU104075 lncRNA upstream 150104 14363039 ~ 14372674 (-) False LOC122351495
TU104117 lncRNA upstream 264397 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 376923 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 381328 14594263 ~ 14595342 (-) True G70396
XM_043248463.1 mRNA downstream 796 14205767 ~ 14207351 (-) True LOC122351400
XM_043248147.1 mRNA downstream 2915 14204332 ~ 14205232 (-) False LOC122351222
XM_043249210.1 mRNA downstream 4659 14202785 ~ 14203488 (-) True crygm7
XM_043248572.1 mRNA downstream 6483 14200868 ~ 14201664 (-) True si:dkey-57a22.14
XM_043249217.1 mRNA downstream 8082 14199226 ~ 14200065 (-) True crygm6
XM_043248299.1 mRNA upstream 62634 14275569 ~ 14277666 (-) True kctd12.1
XM_043249609.1 mRNA upstream 70667 14283602 ~ 14285530 (-) True zgc:162944
XM_043249471.1 mRNA upstream 74352 14287287 ~ 14290228 (-) True txndc9
XM_043249542.1 mRNA upstream 77914 14290849 ~ 14306284 (-) False rev1
XM_043249541.1 mRNA upstream 77914 14290849 ~ 14306284 (-) True rev1
TU103993 other downstream 268279 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 394820 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 712502 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 712502 13473140 ~ 13495645 (-) False gypc
TU103179 other downstream 1222169 12985124 ~ 12985978 (-) True G69757
TU104362 other upstream 1090168 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1176914 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1558486 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2604205 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2604205 16817140 ~ 16823775 (-) True G70986

Expression Profile