RNA id: XM_043248168.1


Basic Information

Item Value
RNA id XM_043248168.1
length 528
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC122351239
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14132827 ~ 14134121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATGACAAAAgtcACCTTCTATGAGGACAGGAACTTCCAGGGTCGCTCTTATGACTGTATGGGCGACTGTGCCGATTTCTCCTCCTACATGAGCCGTTGTCACTCTTGCAGAGTGCACAGTGGGTGCTGGATGATGTACGATAATCCCAACTACATGGGAAACCAGTATTTCTTCAGAAGGGGAGACTATGCTGATTATATGTCTATGTTTGGAATGAACAACTGCATCAGATCCTGCCGTATGATTCCTATGCACAGGGGATCCTACAGAATGAGGATCTATGAGAGGGATAACTTCATGGGTCAGATGTACGAGATGATGGATGACTGTGACAGCATCATGGACCGTTACCGCATGTCTCACTGCCAGTCCTGTCATGTGATGGACGGCCACTGGCTCTTCTATGAGCAGCCCCACTACAGAGGCAGGATGTGGTACTTCAGGCCTGGAGAGTACAGGAACTTCAGCAATTATGGAGGCATGAGATTCATGAGCATGAGGCGTATCATGGATTCCTGGTACTAG

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103644 lncRNA upstream 157011 13948753 ~ 13975816 (+) False G70069
TU103645 lncRNA upstream 157011 13972327 ~ 13975816 (+) True G70069
TU103636 lncRNA upstream 193097 13931619 ~ 13939730 (+) True G70064
TU103612 lncRNA upstream 345706 13777632 ~ 13787121 (+) True G70045
TU103600 lncRNA upstream 363398 13769229 ~ 13769429 (+) True G70043
XR_006251828.1 lncRNA downstream 172426 14306547 ~ 14329484 (+) True LOC122352011
TU103749 lncRNA downstream 198179 14332300 ~ 14335751 (+) True G70125
TU103646 lncRNA downstream 314092 14448213 ~ 14471817 (+) False G70069
TU103821 lncRNA downstream 445149 14579270 ~ 14580468 (+) True G70181
TU103825 lncRNA downstream 450110 14584231 ~ 14584488 (+) True G70184
XM_043248167.1 mRNA upstream 3185 14128848 ~ 14129642 (+) True LOC122351238
XM_043248567.1 mRNA upstream 9299 14120196 ~ 14123528 (+) True LOC122351490
XM_043249255.1 mRNA upstream 13570 14117623 ~ 14119257 (+) True LOC122351873
XM_043249254.1 mRNA upstream 17252 14114764 ~ 14115575 (+) True LOC122351872
XM_043249275.1 mRNA upstream 20606 14111496 ~ 14112221 (+) True LOC122351888
XM_043249226.1 mRNA downstream 3002 14137123 ~ 14137939 (+) True LOC122351860
XM_043249233.1 mRNA downstream 8120 14142241 ~ 14143055 (+) True LOC122351866
XM_043249231.1 mRNA downstream 13915 14148036 ~ 14148838 (+) True LOC122351864
XM_043249232.1 mRNA downstream 17971 14152092 ~ 14152848 (+) True LOC122351865
XM_043248570.1 mRNA downstream 21603 14155724 ~ 14156504 (+) True LOC122351492
XR_006251758.1 other upstream 450836 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 709001 13423714 ~ 13423826 (+) True trnal-caa
TU103281 other upstream 828236 13289693 ~ 13304591 (+) True G69834
unassigned_transcript_1466 other upstream 1024331 13108415 ~ 13108496 (+) True trnas-cga_5
TU103175 other upstream 1146849 12985171 ~ 12985978 (+) False G69755
XR_006251807.1 other downstream 1267007 15401128 ~ 15425039 (+) False si:ch211-168k14.2
TU104429 other downstream 1574115 15708236 ~ 15711177 (+) False LOC122351678
TU104501 other downstream 1600471 15734592 ~ 15746106 (+) False plcl1
TU104743 other downstream 2594386 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 2611778 16745899 ~ 16749695 (+) False mpc2b