RNA id: XM_043248171.1


Basic Information

Item Value
RNA id XM_043248171.1
length 2278
RNA type mRNA
GC content 0.40
exon number 5
gene id faima
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 13449870 ~ 13454850 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGCTGGAGCAGATTTGTTGTCGGCTAAATTTGGAGCTAGTTGTGTTGATGGTGTTGGCGTCAGTTGCTTTACTATTTTCTGCATTGAGGAAAAGccaatcaaaaacacacaaacgcgTTTTATTTCTGCTCTGGTTTGGACCGacgCTGGAGGACAGAAGATGTCAGGAGATCTCGTAGCCGTGTGGGATGTGGCTTTGAGCGATGGAGTGCACAGGATTGAATTTGAACACGGCACAACCACAGGGAAACGGGTCATTTACATCGATGGAAAGGAAGTTACAAGGAAAGACTGGATGTTCAAACTGGTTGGAAAAGAGACTTTTTATGTGGGTGGTACAAACACAAAGGCCACTATTAACATAGATGCAGTGAGCGGCTTTGCATATGAATACACTCTTGAGATTAACGGACAGAGTCTGAAGAAGTACATGGAAAATCGCTCCAAAGTTACCAGCACATGGCTCCTCAACCTTGATGGCATCGACTGCAGAGTGGTTCTGGAGAAAGATACCATGGATATATGGTGCAATGGACAGAAAATGGAAACAGCTGGTGAGTTTGTTGATGACGGCACAGAGACGCACTTCACTTTGGGCGACCACGACTGCTGCATCAAGGCTGTGAGCAGTGGCAAGAGACGAGATGGCATCATTCACACGCTGCTTGTGGATGGCATGGAAATTTCAGAGTCAGAGTGATCTCTGTGAATGAATGTGTGAGTGTTTCTATTATCCGTCCTCACGAGAAGAGTGTATATACGGATGCTGGGACATCATGTTCTCAAGTATGACCACCGATCAGCATGCGCTGGTTCAGTAATGGACCGTTTTAAGTCAAAAGAGACAAATACAGTGTACTTTTATTGCTACATACCTCACGTAACATCAgcgtttttttttagtttctcaATTTCGTGTCAGTTTGGTTTTTATCATCAGTGAAGTTATCTGTGACCACGGAAAGATGTGAGGATCCCTGGACCTTTACTGGGTGGTTTGGTATGACGGGCATGTCAGATTTagacaatatttttattctttgtgaGGTAGCATCACGGTCTAGTGGTCTAAATGTGAATTAAGTGTGAACGTACTTGTTTAAAGTATTTGGTCTAGAATCTGACCAGCCTCTGACTCATATTTAGGGTCAGACTACAGCAATAACATTCAATAGgatgtataatatttttccaattcaatacttttatttgacTTTGCGTTTTTGAGACACTGGCTCAAGGCCTCGGGACAAGCAAAATTGCTCATTCCTGCCATTCAAGCTTCATGTGTCTGGTGAATTCAAGATGACATGACAGACTCCTGTTgagattgaaatgaaaaatgatcagAATCTAAATATGAATTAAGCTATTTCTTTTTGTCAAGTTTTAGTCACTTTTCCTATTTGgaataaaaaatggttttgtatttaaatgctcTACAGTGCCCTACGTAAGTATTGAGACGGTAAAGACATTATAAGATGAATTTGAGACAAAACTACAGACTTGCATGCTTGCATGCAAACTTCTGACTAGAACCAAAAATAGAAAGGCAAGATTACAGTTTGCCAAATAGCACAAAGGTCAGTCAGTACAGTTTTGGAAGTGAGATTTATGGACCGAGATTAAACTTTATCTAActtatggaagaaaaaaaaaaaagaaaattcaaatgATCCTAAGCATACAGCCTTATGTGTAAAAGTTGGCGGAGGCGGTGTTATGGTATGAGCATGCACAGCTGTCTCTGGTAAGGCCCTCTCAATTTTAGTGAGGACCTGGGGTACAAAACTATCTTGGCTACCAATATTCAAAGAACCAGACTCATCAGAAAGTGCTTCGTAGCGCATCAGGACAATGACCTATAGCACCCTGCCAGGGAAGGAAAGAATTGAAAATTCTTAAGATTGCTCAAATTAATATCCAGATTTAAATCCATTTGAACATGAATTTCACCAACTGAAGGGGAGACTAAAACAGAGCAAGAGTCCGGTGATGTCTATGATTGCTTGCAAGGGATCTGCAACTAATCTTTTACTTCTGCCTTGAGTTTAACTGTCCCATGCTCACATCAAATAGTGGGACGACCTCTAAAAGTGCTGTCCTTTTATATTTGGTAAAACATGTATGTGTTgattctgttattttatctaatatttattagtaattaatttattatatttgcagATGTCTTGACTACACAGCAAACAAAGAACTTTCATTATTGTCCCAGTTTTTATGGAgggcactatatatatatatatatatatata

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103479 lncRNA downstream 37431 13411812 ~ 13412439 (-) True G69953
TU103390 lncRNA downstream 122457 13302403 ~ 13327413 (-) True G69888
TU103400 lncRNA downstream 124201 13310873 ~ 13325669 (-) True G69896
XR_006251825.1 lncRNA downstream 217660 13228154 ~ 13232210 (-) True LOC122351987
TU103525 lncRNA upstream 18290 13473140 ~ 13495645 (-) False gypc
TU103573 lncRNA upstream 214953 13669803 ~ 13673807 (-) False tmem163a
TU103577 lncRNA upstream 219868 13674718 ~ 13675514 (-) True G70027
TU103589 lncRNA upstream 224530 13679380 ~ 13682139 (-) True G70033
TU103926 lncRNA upstream 360861 13815711 ~ 13816743 (-) True G70263
XM_043248838.1 mRNA downstream 5698 13433965 ~ 13444172 (-) True parp14rs1
XM_043248842.1 mRNA downstream 25025 13420015 ~ 13424845 (-) True dhrs12
XM_043249085.1 mRNA downstream 39471 13400252 ~ 13410399 (-) True ints6
XM_043248869.1 mRNA downstream 86955 13354751 ~ 13362915 (-) True cops8
XM_043248870.1 mRNA downstream 86956 13358826 ~ 13362914 (-) False cops8
XM_043248890.1 mRNA upstream 18285 13473135 ~ 13495667 (-) True gypc
XM_043248889.1 mRNA upstream 58752 13513602 ~ 13515484 (-) True LOC122351673
XM_043248888.1 mRNA upstream 60838 13515688 ~ 13574954 (-) True cntnap5a
XM_043249058.1 mRNA upstream 187453 13642303 ~ 13671482 (-) True tmem163a
XM_043248515.1 mRNA upstream 230135 13684985 ~ 13694187 (-) True LOC122351432
TU103179 other downstream 463892 12985124 ~ 12985978 (-) True G69757
XR_006251867.1 other downstream 711699 12738044 ~ 12738171 (-) True LOC122352189
TU103144 other downstream 738046 12708631 ~ 12711824 (-) False LOC122351186
TU102995 other downstream 1026424 12422429 ~ 12423446 (-) True G69650
XR_006251743.1 other downstream 1260214 12166991 ~ 12189656 (-) True gtdc1
TU103524 other upstream 18290 13473140 ~ 13495645 (-) False gypc
TU103526 other upstream 18290 13473140 ~ 13495645 (-) False gypc
TU103924 other upstream 352972 13807822 ~ 13813327 (-) True G70261
TU103993 other upstream 483409 13938259 ~ 13939868 (-) True G70294
TU104031 other upstream 741629 14196479 ~ 14253776 (-) True G70317

Expression Profile