RNA id: XM_043248176.1


Basic Information

Item Value
RNA id XM_043248176.1
length 540
RNA type mRNA
GC content 0.51
exon number 3
gene id crygm3
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14098129 ~ 14100450 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTCTAGTACCCACACCTGTTGTATAATCTTCTACGAGGACAGGAACTTCCAGGGTCGCTCCTATGAGTGCAGCAGTGACTGCTCTGATATGTCTACCTACCTCAGCCGCTGTCATTCATGCAGAGTGGAGAGCGGCTGCTTTGTGGTCTATGACCGTCCTAACTACATGGGAAACCAGTTCTTTATGAGGAGGGGCGAGTACGCGGATTGCATGCGCATGGGAATGAGTGATGGCATCAGGTCCTGTCGCATGGTTCCTCAGTACAGGGGACCCTACAGGATGAGGGTTTACGAGAGAGAGAACTTCGGAGGTCAGATGTACGAGCTGACAGATGACTGCGACTCCTTCATAGAACGCTATCGCATGTCCGACTGCCAGTCCTGTCATGTGATGGAAGGCCACTGGCTCATGTATGAGCAGCCCCACTACAGAGGCAGGATGATATACTTCAGACCTGGAGAGTACAGGAGCTTCAGAGATATGGGATACAGCAACGTGAGATTCAGCTCTGTTAGAAGAATCATGGACCTGTGTTAA

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103644 lncRNA upstream 123886 13948753 ~ 13975816 (+) False G70069
TU103645 lncRNA upstream 123886 13972327 ~ 13975816 (+) True G70069
TU103636 lncRNA upstream 159972 13931619 ~ 13939730 (+) True G70064
TU103612 lncRNA upstream 312581 13777632 ~ 13787121 (+) True G70045
TU103600 lncRNA upstream 330273 13769229 ~ 13769429 (+) True G70043
XR_006251828.1 lncRNA downstream 206097 14306547 ~ 14329484 (+) True LOC122352011
TU103749 lncRNA downstream 231850 14332300 ~ 14335751 (+) True G70125
TU103646 lncRNA downstream 347763 14448213 ~ 14471817 (+) False G70069
TU103821 lncRNA downstream 478820 14579270 ~ 14580468 (+) True G70181
TU103825 lncRNA downstream 483781 14584231 ~ 14584488 (+) True G70184
XM_043249705.1 mRNA upstream 204346 13841132 ~ 13895356 (+) False neb
XM_043248173.1 mRNA downstream 1664 14102114 ~ 14102949 (+) True crygm5
XM_043249234.1 mRNA downstream 6161 14106611 ~ 14107425 (+) True LOC122351867
XM_043249275.1 mRNA downstream 11046 14111496 ~ 14112221 (+) True LOC122351888
XM_043249254.1 mRNA downstream 14314 14114764 ~ 14115575 (+) True LOC122351872
XM_043249255.1 mRNA downstream 17173 14117623 ~ 14119257 (+) True LOC122351873
XR_006251758.1 other upstream 417711 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 675876 13423714 ~ 13423826 (+) True trnal-caa
TU103281 other upstream 795111 13289693 ~ 13304591 (+) True G69834
unassigned_transcript_1466 other upstream 991206 13108415 ~ 13108496 (+) True trnas-cga_5
TU103175 other upstream 1113724 12985171 ~ 12985978 (+) False G69755
XR_006251807.1 other downstream 1300678 15401128 ~ 15425039 (+) False si:ch211-168k14.2
TU104429 other downstream 1607786 15708236 ~ 15711177 (+) False LOC122351678
TU104501 other downstream 1634142 15734592 ~ 15746106 (+) False plcl1
TU104743 other downstream 2628057 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 2645449 16745899 ~ 16749695 (+) False mpc2b