RNA id: XM_043248182.1


Basic Information

Item Value
RNA id XM_043248182.1
length 4973
RNA type mRNA
GC content 0.50
exon number 31
gene id cfap65
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7367664 ~ 7380524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTCATGGAGCTCGAACACACAACTGAACCGCGAGGAAAGCTTTCGGCGTGGCGAAACAAATTAACCGACACATTTCTATTCACTTtccttgtttgtttgtgatatTACTGCACGAGGTAAAGTTTCTGTGGCGCAATGTTGACCGATCATCCAGTGAATCCTCTGAGCCTTTCCTTTGGAGTCACACACAGCCCACGAAGAAAGAGGGTATCACGCCTCGGGACAGGGAGTCCTCTGAAGAGAACTCAGAACTTTTATGGGGTAGAGACCTGGGCTGAGCTGGTCTGGGAGGGCTGGGAGCCACGACGAGAGTATACCAAATCACTGATTCTCAGAAGCATTCATGGAAAACTCCAGAAACTCACCTTCAGaCCTCCTGCTTCCATGTTCTTCACCACACCATTTCCTCAGACCATTCTTCTAAGCCCAGGAACTTCTTATTCACTTCCAGTTACTTTTCAGCCTCTTGAGAAATGCGAGTACACGGACACTATAGAGTTTCAGGGCAAGGAAGGCTCATTCCACGTGTCTCTGCGAGCAGTGATTCCTCATCATGCCCTGGAGGTACCAGACAAGGTGATGCTGCCACCCTGTGCTGCCCAGCATAGCTCCCAAACCAGCTTTCTCTTTCGTAATTCCAGTAAGCTGCAGACAGGATTCAGGTGGTTTGTGGATCCTCCGTTCCAGCTGTCCCCTGAGACTGGACAGTTGAAGCCTGGAGAAGAATGCAGGGTTACAGTAGAGTTTAAGCCCCAGCAGGCTTTAGTGTATCAGGCTGAGGCCTGTTGTGCTTTTGGAGATGATGGGGAAAACAGCTGTACTGTGCGTCTGCGTGGGCTGTCAAAGTACCCTCACCTGCAGATCAGCGCCACAGGACAAGAGGAAGGCTGCAAGGTGCTTGAGTTCGGCAGTGTGGCAGTAGGTGACTCTCTTGAAAGGGCCTTTGAGATCTACAACCTCTCCGATGTCAGCACAACATTCAGTCTGTCCTGGTTGAGACGTCCCGCTCTCATGGAGTCTGTGTTCTGCTGCGAGGTTCACGAGGGGAAGATCGCTCCAAATTCTGTGTTGAAAGTCCCCGTCTGCTTCTCCCCAATCACAGTGGACAGCATAAACGTGGACTACCTCTCTCTAACCTGTCCTGGGGCTGTAAGCAAAGACCTGCTCAAAGTGTCAGGCACCTGTATAGGACCAGTTGTGTCTCTAAATACCTCTGTACTGGATTTTGGCTGTGTTGAGGAGGACACAGAGGTCACACACAATGTACAGATCATCAACTCCTCTGCAGTATTGGCTTATTACCAGTTTGATGTGGACACTAGCAGCCATAATGTGTTCAGAATTGATAAGCCTTGTGGCTCTCTGACAGGCAGCAGCAAACTCACTCTGCGTGTGAAGTTCCGCCCATATCAACCTATAGCTTATCACAAGACCGTGACCTGTTTACTGCTGCACAGGGAGCCACTGTTTCTGGATTTGATTGGCACCTGTCACTCAGAACAGCTGAAGCCAGCCGTTTTAACCCCCAGACACCTAAGTATCTACAGAATAAATCTGCTACGAGGGCTCACCTGTTATCCTCCTGACATACTGAGTGCCTTGCTGGAcgaacacaaattaaaactgGATGACAGCGGAGCCTTGCTAATCCAGGAGATTCCAGGAGAGGACACTGACAAATCTACAATTCTTTTAAAGAAACGCAGTCCTCTGGAGGAGTTTTTCCACGTTAATTCAGCATCTGAAGTGGAAACAGAACTTGACAACATCTCAAACTCCTCTAGATTCCCCAACCCCCATGTTACAGTTCAGCCCTCTGAGCTCATTTTTTATGATGGCCCAGCGTCTAAGTCTGTCTCCATCACCAACCACACCAAAGGCAAGATATGTCTGATTTGGACTCATGGAGTCGAATCCTCTTTCTCCATCTTTCCTCTCTCCTGTGAGCTGGGCCCTCTAAAGAGCACAGCTTTCAGAGTGACATACAGCCCCAACCAGCAGAACGTCTTCCATTCAGCACAACTTGAGTGTTTCACTTTTTACAAGGTTCTGAGGGATCATAGAAGTGTACAGGATCGCACTGTGTGTCCACCGTGGTGCCTTACAGTGAGGGTGAGCGGTCACTCGTTTGAAACTGGAAAAGAGCCCTTCATCCCCAAATTCTCTCTTAATCACCCTAAAGTAGTATTTCCAGCACTTAGACAGGCTGCATACCACAGTATtctcctgcagaatacaggggACCTCCCCTTGATCTTCAGACTAGACCCAGAGGAATGTCCATCTGTATGTGTGCTGCCACCCAGTGGTCTGGTGCCATCAGGCAGCCACCAGGTCCTCACATTCAGATGCACTCCTTCACCGGATCACCCTGCCAGCATCCCTTTGACATTACATCTGAATGCCAGCCCCAGACACACACAGGTACTGAATGTAGTTGCTGTAGCAGAGAAGCTTTCCATGAGTTTGGAGGGGGATGGCAGCCTGTTCTTTCAGCCCACAGCCGTTGGCTCATGCTCTGAGAGAAGCATGTGGTTGAAGAACCTGAGCAGGGTGCCAGTGGAGTTCAAGTGGAGACTGTGTGGATCTGACCAAAGGGTTCTGACTGTGCTGCcggacacagacacactccagCCCAATGAATCGAAGgTACAGAAGTGGTCCTTTTCCCCCATAGAGGAGATGATGTATAGCATGAAGCCCAGTCTCACATTCTGGCCTGTCCAAACGCCACAATGCAAGAAGTCCAGGCTTACCATTAAAGCTGTGGGAGTGGCATCCAAAGGGTCTCTCCAGgcCGAACACCCTGTTATAGATCTTGGTGAGGTCCTGGTGGGAAGCTGTAAGTCATTTGATGTCCCTCTTCTGAACGACAGCCCCTGTGCTGTCAGCTACTCTCTGACCACACAGCAGAGCGTCACAGCTGCAGGCCTCCCTGAAGATAAGACTCAAGATCCTTTGGttCTGGAGATGGAGAATGTAAGTGGAACTATACCTGCTGACTGCAGACTACCGATACGCTGCACAGTGAAACCGGCACGCAGGGCCCATTACTGCTGGACCATCAGTTACCACATCCTCAATGCATCTGGCTCTGGAGGAGGAGAAGTGCAATCTGTTTGCCATGTACAGGCCGAGGGAGTGTACCCCACCCTGGAGGTGATGGATGCCCGTAGCTGTGGCAGTGTGGAGGGACTTGGTAAACTGCAGCTCTGGCGTCTCTTCAGTCTGGATGCACTCAACACTTATCTGCACAGAGATCCCAGCCCATCTGAGCTCACCTTCAGGGTGCCCACAAGACACAGTTTTCAGCGTTGCCCTTCCATCTTCACATCAGCCATGTTGGATTTTAGCTTCAGCGCTGCTCCCCTGGGCTCAGACCCCTCTagtattttgcttttgtttaagAACCCAGGAAGTATTCCTGTAGAGTGGTCATTCTTGCTTCCAGAGGACCAACAGATTGAGCTGGAGTACTGGGCTGAGTCTGGAGATTTCAGTCCATCTGAGCTCCACCTGATGAAAATTCAGGACCACAGGCTCTTCTCAGTCTCCCCACGTTCTGGTAAACTCCTGCCTGGCCAACAGAAAACAGTACAGTTCACATATAGACATGACTTTGTGGGAACAGATCGTCTTCCTGTCTTGTTGAAACTTTCACATGGAAGAGAAATACTGattaaTTTTATGGGAGTAACTGTGGAAAGAGACATACGTTACATTTACCTTTCCTCCAACCGACACATCTTTTCCCCAGTGGCAATTGGAGGGTTCAATCCCCCCAAACAGGTGTATGAGTTGTATAATGCAGGCGCTCTTCCACTGAGATACCACATTGACACCACTCCACTGGAGGAGCTAATGGAGGAGAACTTCAGTCACCCGGTCTTACAGTGTCTGAACCCTGGAGGAGAAGTGGAACCAGGCCACACTGCCCTGGTGGAGTGGATCTTCTCCCCACTGGAGGCCAAAACATACAGTGTGGACGTACCTATACACGTGGTGGAGGGGGACAGCATGTTCGTAACCTTTGAGGGCCAAGGCTTTGATGAAAGAGAGGCAAAACCCATTCAAATACAAGAAGGGCGTATTACTGTGCCTTGCACTCAAAGAATCCCAGTACCTGGACAAGTTGTATTCCTGTCagaagagagagtgtgttttgGTGATATCCCAGTGGGCTCTCGTAGTACTCGCATCCTTTTTTTGACCAATGTCTCACACACAGACCAAGTGTTGTATAAATGGAGTGGAACAAGCACAGAATGCCAACAGACTGTAAAGATCCTTCCTGAGAGTGGTTGTCTGGCACCAGAGGAGAGTGCTCTCTGCATCCTGACAATACAGGACTCGGGCAGCCCCACTTTCTATCAGCAAGACCTCATCTGCGAGATAACTCTTGTGCAGAAGCTTGCACAGTATCACAGAGACCTTCGACAGTGGGAGGaggagacagaaagacagaaatatgAGTTTACTATCACTGAGAAAGACTTGATACAGACAAACCAACTGGATAAATTCTTTCAGGAAGGTGCAGTGCTTGAACAGAAAACCAGCACAAGAAAATACAAGACTCTTCCACCCATTCGTAGCAGTGATCAAGCTGAAAGCGGTTCCTCGGTGAGACCCAGTCGGGCTGAACAGCGCGCCCAGCAGCAGATGGGTCAGGAAAGGAGAAGACGTCCCGAGCCTCCTCGTCCTGCTATACTGCACTTAGCTGTCACTGCACGCTCTCACAGCCTCATGGAGTATCAGACACATTTCCCCAATCAGCTCAACACGCATTACATCAACAGgtcTAGTCAACccaagctttttcagtctgggACAGgAGTCTCCTAGATGAGCCTCAGTTTCAGCAGTCTCTGGTAGAGGGCGACAATGAGCAGGTGCCATACTTCACACAGCTGCGGCCTGCTCCTGAGCTCCCCACACAAACAAAACCCCACTCGGCTGCAGGCTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101200 lncRNA upstream 31305 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 66169 7298033 ~ 7301495 (+) False G68397
TU101158 lncRNA upstream 69379 7280767 ~ 7298285 (+) True G68397
TU101189 lncRNA upstream 103951 7262541 ~ 7263713 (+) True G68424
TU101162 lncRNA upstream 108270 7256680 ~ 7259394 (+) True G68401
TU101216 lncRNA downstream 473748 7853481 ~ 7854278 (+) True G68446
TU101545 lncRNA downstream 824120 8203853 ~ 8205963 (+) True G68668
TU101562 lncRNA downstream 842854 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 1123023 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 1220991 8600724 ~ 8614984 (+) True LOC122351403
XM_043249397.1 mRNA upstream 671 7363964 ~ 7366993 (+) True mnx2a
XM_043248154.1 mRNA upstream 39072 7304840 ~ 7328592 (+) True ptprna
XM_043248155.1 mRNA upstream 39072 7307964 ~ 7328592 (+) False ptprna
XM_043249056.1 mRNA upstream 76122 7271362 ~ 7291542 (+) True tmem198a
XM_043248183.1 mRNA downstream 1085 7380818 ~ 7383202 (+) True LOC122351251
XM_043248936.1 mRNA downstream 24619 7404352 ~ 7430484 (+) True fn1a
XM_043249476.1 mRNA downstream 94265 7473998 ~ 7728791 (+) True pard3bb
XM_043249475.1 mRNA downstream 94265 7473998 ~ 7728791 (+) False pard3bb
XM_043249478.1 mRNA downstream 94265 7473998 ~ 7728791 (+) False pard3bb
TU100736 other upstream 1402784 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1481911 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1910135 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1910401 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1910821 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 961565 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1051412 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1484916 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1762859 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1762859 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile