RNA id: XR_006251717.1


Basic Information

Item Value
RNA id XR_006251717.1
length 2064
RNA type transcript
GC content 0.49
exon number 17
gene id lmln
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18682672 ~ 18689542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCTCTGGGTTTATGGGTGAAGCCGGTTTAATGAACAGCTGATTTGAATTCTTCACGAAACATCCTTCAATTTTATGCGGCGTTGAAGTGCTTTCTGCAGCGTGACAGGACGGAGATATGAATATTAAAGTCACGGAGTGAATGATGGCGTCAGGATGGCGGCAGCCTCGATCAGTTAGAGCTGCTTTACTCTTTAAcaccatcatcatcttcatcagcaCCGGCGCACAGACGCACACCTGTGACCATAAAGTGCCCCTGCCCACAGAGGTCATACATAAAGTGTTTCTGAAGCCAGATAGATTAACCAAAAGAAGCACTGACCAGCAGTTAAAGATCCAAATAGAGTACGACTCCAGCTTGGATGGGTTAGATGAAGCCAAAAGCAGCCTTGTGAAGGACAAGCTCCTCCCACAGGCTATTGATTATCTTGAGAGGGCCTTCAGGGTTCGTAGGCAGTCAGGCCCAGTATTACTGAGCAGACAATGCGCAACCAATCAGTACCTTAGGAAAAGAGATGATCCACATCGCTACTGTCAGGGACCATGTGCAGACATCACCAAGTGTGGCCCAGTCGTTGTCCCTGAGCAACATTTGCAGCAATGCAGGGTTTGCAGTGAGTCTGGCAAGTCCTGCGGCCCCGCTGGTCCTCCTGACGGCGAAGGGGTGGTCAGGGCGGATTTTGTGCTGTACGTGAGCGCGATGACCACAGAGCGTTGTGGACAAGAAAACATTGTAGCCTATGCAGCGTACTGCCAGCTGGAGTCTGAACTAGACAGGCCCATCGCTGGATATGCCAATCTCTGTCCCAATATGATCTCTACTCAACCTCAGGAGTTTGAAGGGATGCTGTCCACAGTCAAACACGAGATCATTCATGCCCTGGGTTTTTCTGCAGGACTCTTCGCGTTTTACCACGATGATGATGGGAAACCTTTAACACCACGTTCTGCAAGTGGTCTACCTGCATACAATGAAAGtttAGGGTTATATCAGTGGAGTGATAAAGTCATCAAAAGAGCGACTCGGCTGTGGGACATCCGTGGAGGCCACATGGTCAGACACACAGTCCATCTTCTGGCCACCCCACGCGTAGTTGAGGAAGCCAGGAGACATTTTAATTGCCCCATTCTAGAGGGCATGGAACTGGAGAACCAGGGAGGTGCTGGCACAGAGTTCAACCATTGGGAAAAACGTCTGTTAGAGaatGAGGCAATGACCGGATCTCACACGCAGAACAGAGTGTTTTCCAGAATTTCTTTGGCCATTATGGAGGATACAGGGTGGTACAGGGCCAATTATAGTATGGCGGAAAACTTGGAGTGGGGAAGAGGTTTGGGTTGCGACTTCGTGATGAAAAGCTGTAAATTCTGGATAGATCAACATCGCCATACGAAGCCAACCCTGAGCCCGTACTGTGATTCTGTGAGGAGCGCACCTCTACAGCTCACCTGCAGGCAGGACCAGCTGGCAGTGGCCGTGTGCAATCTGCAGAAGTATCCTCATACACTTCCTGCAGAGTATCAGTACTTTGACCGTATCCCTGGTGTACCCGAGGAAGATTTACCAGCATATGGTGGGGCCGTAGAGATTGCAGACTATTGTCCTTTTAGTCAGGAGTTTAGTTGGCATGTGGGTGGGGAATACCAGCGCAGCTCTTACTGCAGGATACATGAAAACCAGCCAGcCACATGGAGAAACTATGGGGCAGAACAGTATGGCCCGGGATCAGTGTGTCTGTACCAGAAGTCACCATTTGTAATGGAGCAGTGCACAAAAAGAATGACCTACCCAGACTGGGGCAGTGGTTGCTATAAGaCCAATGCAAAAAGCCCAACACATGGGCAGGCAGtatattaatgtttcattttgatgtcaacatgaaacagctttGGACTTGTGATGCTGTGATGCACGGTACACTTATTTGCTGTTAcgcactgcatgaaagGTATCTTGCACAGCCCAAGGGTTGTTGGTCTGGGTGCAGAATGAATCGTATCCATGTGTTCGGACTGGTCAGGTGATCAATGTGAGCATACGAATGAATGGATGGGTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105574 lncRNA upstream 138674 18543774 ~ 18543998 (+) True G71334
TU105573 lncRNA upstream 141336 18540883 ~ 18541336 (+) True G71333
TU105571 lncRNA upstream 143972 18538480 ~ 18538700 (+) True G71331
TU105387 lncRNA upstream 652124 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 1040234 17641910 ~ 17642438 (+) True G71167
TU105770 lncRNA downstream 59688 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 128915 18817138 ~ 18892052 (+) False G71442
XR_006251757.1 lncRNA downstream 201700 18889923 ~ 18893969 (+) True LOC122351431
TU105801 lncRNA downstream 205328 18893551 ~ 18893849 (+) False LOC122351431
TU105813 lncRNA downstream 292090 18980313 ~ 18985811 (+) True G71457
XM_043248163.1 mRNA upstream 470 18675151 ~ 18682202 (+) True lss
XM_043249084.1 mRNA upstream 7934 18663351 ~ 18674738 (+) True LOC122351791
XM_043249083.1 mRNA upstream 7934 18663356 ~ 18674738 (+) False LOC122351791
XM_043249209.1 mRNA upstream 19802 18659765 ~ 18662870 (+) True LOC122351850
XM_043249206.1 mRNA upstream 24962 18653071 ~ 18657710 (+) True LOC122351848
XM_043248797.1 mRNA downstream 4352 18692575 ~ 18708193 (+) True osbpl11
XM_043249398.1 mRNA downstream 32950 18721173 ~ 18733013 (+) True snx4
XM_043249454.1 mRNA downstream 46196 18734419 ~ 18740056 (+) True znf148
XM_043248576.1 mRNA downstream 54587 18742810 ~ 18760266 (+) True slc12a8
XM_043248577.1 mRNA downstream 54587 18742810 ~ 18760266 (+) False slc12a8
XR_006251742.1 other upstream 41492 18635106 ~ 18641180 (+) False plcd4b
XR_006251851.1 other upstream 63285 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other upstream 63285 18611996 ~ 18619387 (+) False tfcp2l1
TU105623 other upstream 129790 18550278 ~ 18552882 (+) False clasp1a
XR_006251866.1 other upstream 134065 18548481 ~ 18548607 (+) True LOC122352188
TU105802 other downstream 213406 18901629 ~ 18907047 (+) False cps1
TU105807 other downstream 229347 18917570 ~ 18920415 (+) False cps1
TU105976 other downstream 933061 19621284 ~ 19621493 (+) True G71585
TU106041 other downstream 1021162 19709385 ~ 19714402 (+) False ormdl1
TU106423 other downstream 1736778 20425001 ~ 20750851 (+) True G71825

Expression Profile