RNA id: XM_043248187.1


Basic Information

Item Value
RNA id XM_043248187.1
length 9022
RNA type mRNA
GC content 0.44
exon number 12
gene id akap11
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3419061 ~ 3436944 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCACACTTCACATAAAGAGCATTTAATTTCTGTGCAAATTAAGTTTCAGATTACACAGATTCATGTATGAGAGAGACATATCTGGTAGAAAAtcccaataaaataaaaaaacctcaaaatcaGATTCAAGTAAGACACCCCTTAATTTTCTCCAAATACAAATCAGTTTTCAGCAATAAAACCTAACTACCCTGATCTCAGAGTTAAGTGAGGACGCTTCCAAGTGAagaactacattacccataattctgaaaaaaggtcCACCAATCAGAGAATGTTCATGTTGTTACCGTGAAAACTAAATTGCTGTACTTAACTGACGTTAAAATAATACCAActtctaaaaacagaaaagtctTTGTTCTCTTCAGGAAGCAAATGTGCACTTCATCCCAGTTCTCTGGTAAAATTCATTGAAGTGTTACTTTTAGCCAGTTATTTTCAACGTAACCCCGTCCAAGTAAACACTGGGTGTCAAAACTAACGTTAAAACCCGTTCAAATCCTACATTCAGTTGCattggtttatttttacaaGTGTATCATACTCCCATCATTGTCTCTGCGCTCAGCTTCTCTCAGCCGCCGCTCCGGGTTTGATTACTTTCGCCTGCTCGTCTTGTTTTGATGAAATGAACGGACGTAAGAGCAGCTAGCTGCCCACCGCACGGCTCTGTCGCTACAAGGAGAGGAGAGCCTCCTGTCCAGCACTGCAACATCATGGACGCCTGTGCACGGATCAGAGGGGTCCCATTAAAGAGCCGTGCCACCATGAAGAAAGAGACCATGCGCGAGGGCTCAAACCCGGGCCTGAAGAGCCTGTTGAAACACAAGAAGGAGCTGTGCAATGTCGTAGTGGAGCTGCATAGTAAAGAACCACAGTCCCTATCAGAAGTACATTATGTATGCTTGCCTAGCCATGCTGAGGGGGAAGATTTTACTCTACAGGCTCTGACGTCCCTCTCCACTGAGATGATGGAGTTGCTTCGATCACTACATGTACACACCCTTAAAGATGAAGAGATTCTTCTCCTCAAAGACCCCAAAAGGCCTTTTGAGAGAAAAGAGAGTGTTTCACAGgccTGTTCAAGAGCTTTGTGCGTATTGAGACATAGCCCCACTCCTCAGATTAGTGTTTGCGGCATGCTGGGGTTGTTGGCTCGATACACGGCTGGGATAAGGTATGCACTGGAGTTACAGCTTCTTCAGAGGGGCGCTTCAGAAGCATGCCAAGCTGAGGATGATGACACCAATCAGTCTGTCTCTTCTATCGAAGAGGACTTTGTTACTGCTTTTGAGCATCTTGAAGAGGAGGATACAGGTGGCCATAGTCAGAGAAACCAAAGGGATGTGGCATCCCAGACTGTCccctttcatttaaaagactTATCCGGATCTCGCATTATTATAAGTTCCATCCCAAGGAAGTCGGTGCACAAAGAAAAGGCTGCTGCAAAAGTGTCAGAAACTGTCCTGAAGTCAACAACGTGGCCCACAAGTTCAGAGAACTCGTATGCACTTAGCAGTCTTCCAAAGGGACGTGCTACTTCTACATCCCTCACAGAGTCAGATGAGTCAGACTGCTCAAGTCCCAGCCCTATTATATTCCTGGATGAAGTTGGATATCAGAAGAGTCTTAAAGCAAAACTTGACATTCCCAAGATCCCTGTTTTAAAGGATGGAGTTGAAGATTCTGACTCAGAAGTCAGTGAATTTTTCGACAGCTTTGATCAGTTTGATGAACTAGACCAGTCTTTTGATTCCAACATCAAGGTCCTGAAAGAACAGCCCCTCCTTGGTCAAACAGAGAAGCTTGTTGACAACTCTGGTTGTAAATTTGTGTCAAGGGGGTGCTCGACCACAGCAATGAACCCTCACAAGTTTGATCATAGGACTCTTCCAGCCAATGTCAAGAAACCTACTCCACTTAAACCAGGATCCCCATACAGTATTCACTCTGATTCACCAGATTCCCCACGGCCTGCAAGGACTCCCTGCGAGGAAAGCGGGCCGCTCTTCAGTCCAGTTCGTTCATCTGCATTTAGCCCACTCGGAGAAGGAGGCTCCTTAGAGTATTTTTGGAAGGCAGATGGAGATGGCTCAGAATTGCGTAAACCACAGGACCTTTGCTCGCTGTACAAAACGTACTCCGATTTTGCCAACAACCTGTCAAAAGAAATCCTTGGATCGGTCTGTGGGTACTCCTCCCCTGttgattttaacattaataagaaCTTGAGCTGTGTGTGTCATAAGGAGTTCAAAAACACTAATGGGCATCTAATGAAGCTTTCAGACATCCAGGAGACAGTCACCATCACCAAATCCCAATCACAGTCTCTTAAGGATGGGATTCAGAAGTTTGCTACAGACTTGGTTGAAATGAGCCTTGGAAGTGCCTTAAGGGACTTGCAAAAAGGTGTGTCCTCATGTACCACTACACTTTGCCATTTGGCTGCAAGACTGACTTCTTCAGTATTTCAAATGGCCTTTCATGAGATAGGTATGCGCCATGCATATGTGTTAAAAGAGCGTGCCATAAACGGTCTAGCTAGTTTCTTAGTAGGGGAAGCCATTTCTGGAGCCCTCAAAGAGTTCCTCTTTGTGAAAAAGCAGATTTTCAACAACACTGTCACACGATTTGCTGCAGATCTGGCTGAGGAGTTAGTGTTTGAAGGTATTATGGAGGTCTGCCAGTTTTCACATCCCTCAACTCCACTCACACCAAGTGACTGGTCGTTTGAGCAAGAGGAGGAAGTGGTTTCGTCCTATGCCTCTGACCTGTCAGAGTCTGTTCTCCAAGAGGCTTTTATAGAGCTCTCACAAGCTGATGTGACTTTCACTACACAGGCAGCTATCAGTGTGTCAGTAGACAACATTTGCTATGTGAGTGCTGAGGATAGTTCTCTCATCACAAAAACGTGCAGTGCCCAAACAAGCTATCTTGGATCTCAGGCCATTGCAGAGGCTGCAAATCAAGAGCAGGATGGTTGCACAGTGAAAAAAGCCTTGTATTGTGTGTCTGGTATGGCCAGTTGTGTTCCAGTTCCTGTGGCTGGCAAGGTCATATCCCATGTGAACAACTCTGATGAACCTTCTCAGTATAATACCAGTATTGGTCACGTATGTCAGACCAGTCCTAAAAGAACCATTTGTTGCCAAGTGGAAGTGGCATCCTCAAACTCAGAGGCCTCTGAAACTACTCAGACTGAGTCATCTCCAGGTCCTGCAAGAATCCAGGATGCCAGCGTGGAGGTAGTTCTTGGCAATCCATCCACTGAAAATGATTCCACCAAACCCTCCATTGGAAAGACATTTCAAAACTTCTCTGGCAATATGGTGGACACTATAGTAGGGGAGGCATTTGACTTGATGCATTCCTCAACAAAAGTGAAGAAGAAAGTGGAGGATTGTGCAGACTTTTTGAGCAAAACAATAGCATCTCGCATATCCACTCCAAGCCAGGTAATTGTTAAATCACAAGATGCATCGACTCCCTCACAGGTTCCCTTTCACTTGGTATCAAAGGGCTCTTGTGACCCATCCTCCAGAAGTGTACGTCCAGTCTCTAAGCTCACCCCAGATGTCCGTTCTGTCGTGAGAATGGACACACTGGAAGTGCCCACTTTTGAAGTTGCCTCATGTGGAGGTAGAAAAGCCGGTGCCGATGATTTTTCAAGCAGCAACTCTGGTACAAAATCGACTGAAATCCCTAGCACTCCACCTTCAAGTCCTCAGCAGTCGTCGGATGAATACAGCGAGAAACAGATCAGACAGTTCTCGAAGaagcttaaaggaacactcgCAAAAGAATTTTCTCCTGCGACTCCTCCACCCACCCCTTATTACCCGCCTGCCACCGACATCAAAGAAGAAGGTTCGGTTACAGACAAGGCCGATTTCATGCTCAAACTCATTAGGTCTCTCTCTGAAGAAGCTGGCAGCAATGAAGACGAGGAGGAAAACCAGGAAGATTGTCCTCACTCTAGAAACTGCCAGGCAGAGCTGATTCCCAATGTCAGGAGCAGAATGATCGAGAGGAGTGCGCTCCATTATGCAGAGCGTTTAGCGTGCCACATTGTTTCAATGGCCACTGAGATGGACACGTTAAGCCTTGGAGATGTGAAGATGACTGTGGGTGAAGAAAGCAAAGCCAGTGTCGCCTTGCATAGCGCACAGTTCTCAGAGCAGACTTTAAATTCTTTGTGGACGTATGCTGGAGAAGTAGCTGGAGAAGTCATCAATGATGTCAAGAAGATGATGAGTTCAAGCCACTGTCgtcataaaacactgaaaagagGATCTGTCAACTCAGACAAACATCAGAGCGGAGACAGCCTTTTGGGAAGTTTGACTTGTCAGTGGCCTGGTGACGCCCAAGTGAGCGGCAGTTCAAGTGGGTTGTCGTCAGAATATCCAAGTTGCGAGAGTGTCACTGACGAATATGCAGGTTACCTTATAAAGGTGCTTAAGAAAGAGGGAGGTAACCGAGAGCTTATATTGGATCAGTATGCCACTCGCTTGGCATATCGATCTATTAAATCTGGCCTGGCTCATGCAGCACGAAAAATAAAGCAGAGATCACCTTTGAGGCTTCACTCTTCTAGGAGTTTGCACAATGATCGTAGTCCTGATGTTTCCCAAATTCCCACATCCAAGTCATCCCACGGTGCACTTATTGATGGAAAAGATGGATCGTCTTGTGAATCCCTGCCATGTGTTTGTCAAGACGGTCAAGACGTGAGCAGTAATGAATATGTAGAACTTGTGAACTTCGCAGAGTCTCTGGCCTACAACATCACATGTGACGTTACGAGAAAGCTGAGAATGAGCTCTGTTAGACTGCCAAAATCGCTCACTGATTCTTGCCTCTACAGGAAATCCATTGTCGAGGACATGCCAGAAAAtctcatcaaaaatacattttcatgctctcttctaccttatacagAAACTAACAGGCTCTACCATAGTACCAGCAGCTTGAATGACGGCAAAAGCAACAATGGTGTAATACAAGTCATTGAACATTATGCCAGGAAAATTGTCGATGACACTTTGGAAATGACGCTGGGGCCGGCGTGTGTTCAGGCAGTGGGGGACAGGAGGTTACTTGAACGCCATTCCTTCACAGAAAAGCTGGTTGAGGCATATGAAGCTTGTCGATACTGCCAAGGTCGAGAGTGCCTGTTTTGCAGTAGAGACGGCCGCCGTGGTTTCCAGGGAGTGAAAATAAGAAGGCAACAAGAATCAGATGCAGTGACTGGACTAGAAATTCCTAGAATACACATTGATTTGGAAAAGAGAGCTGCTTTTGCTGAAGAAATGGTGTCCAGTGCCATTGAGAAAGCCAAAAAGGAACTGAGCTGCACCAGTTTGAATGCAGACAGTGGGATTGGTCATGATGGCGCAAGCTTTGCAGAAAGTCTCACCACAGAGATTATGACATCCGCATTGTCCAACGTCTGCCAAACCGTCAATCTTGGTACCTCCAGAAGAGAAGGCGTCAATGTGACGGAGTCAACGGTGAGTCAGCAGCTCAGTTTGAGCGTTGGAGATGACAGTCTTGGTAGTTGGTCCAATCTAAGTTTTGAAGAAGACCACCCAGATGAGAGCAGCAGCTTTCACCATCTTAGTGACAGTAATGGAAACAGCAGTAGCTGGAGCAGTCTGGGTTTAGAAGGCGAGGTTTATGAAGAGCATTTGTCCTTCTCTCCATCAGACAGTGACGGCACTGAAGAGAAAGAAGCTGAGGCCAAAGAGGATTCAGGCGGAGCGGTGCGAGTGGAGAGGGAACATGGGCCGGCAGAAAGAGCTCTGCTGGTGGTCAGTACAGACGTCCAGGGTCGAGCTGTGGACCCCCAGTTGACGGCTGTGCTCCAGTGGATCGCCGCCTCTATCGCTGATCTGTCTTTAATGCAGCTGAGTCAGCTCTCAGCCCAGGAGCTGCAGCAGCTGCCGGCCGTGGCACAGAGGCTGAGGGAGAAAGAGTTCAGGGTCGGCGACCTCCTGCAGGCTCTTCTGAGATACTTTGAAGAACGGCGCACTGAAGAAGAGGTCGGGGACGCAAGGAACGGCCACAAGAGCCTCTTCCAGTGGCTTCTGGAGCAAGCGTAAATCACCTTCACACTGACACCCGTCAGCCATTAAACGATGAAGTTTCCTGTCACTTTACAGTGATCTGCAATGTATCTGCCAAACCTAGAGGCATAGCCAGTggaatgtgtttatgtgttgtgTATTGCTTGTGCACCCGTGGACACCCAGGGGGCGCCATAGAAGCAACTGAAGTAATCTAAGAGCCGTTCGTTCAAGTGTGTGTATTGCATGCCGTGACCGAGAGTACCTTTTGCTTGCTTTCACCTCTCTTTTTATCGacactttgttttctttgagatTAGACTGCATATCACGCTTTTGGCACGCCATCACCGATGCCTACCCTACACCATGCCACAACACAAAAGACAGAAGGGTTTTATGAGTTGTTAGGGAATCCCCATGGCTGCAAGAAAGCTTATGTCATCTCCATACCTCTCCTTTGTGGGGATGTTCGCACTTGTCGAAGGGACCAGCCGTGCAATCCAGCATTGCTCCAGGTCAACGTAAGGTATTCCATGATTCACAACCCATAAGAGAAACACTTGGTAATTATAACCTTGTTTCAGCACATTTTTGGCAACAATACTTTGATACCAAGCGTGACGGTTTAAAAATACCATTTCACTGGTAATTAGACAAGAGACAGTTAGCGTTGAAAGAATACATCAACAAGTATTACCTTTAACATTCCCCTCATGTGACTCATACAGTTATTTCAGTGTGATAAGCTATTCATACTGGTATAAAATCAATCCGGTATACCTGTAATGTGCTTTTCTAGTTGTTTACAACATATGCTGCAGTCAGACTCCGTGATCCAACGCCCATAAAGAATCAAACGTGTTTTAGTGCACTACAAAGTTGGTTGCTACTTTACggggaaaacacaaacatactcTTCAACTTAGCTTAAATGGCTGCTAAACATGCACACCCCTTTGCCAAATTAGAAAAACTCGCAGTAAGCTATTGAACGTTACTTATaggggacattttttttttttgtttctgtcttgTTCGCTCGTTGGAGGTTACTGTGACGCACTGGTAGTGCATTGCTTAACGAGGACACATCTGCAGTGAGTATATCTGAACTAGTCAccatctctacacctaaacctctCACTCACTGCCCGACCTATAGTGTGCACTACACTGAATATTGCACTTTACCGAGGAATGGTCAGACAGGCCGCTTCCTATATCTTTGTTTAGATTTCAAAAAACACTCTTAATATAGCTAAGCCGTAACAGATCGCAGACAGCTAGTAGCTGTTTGGCACATCTAGCTGATCAAGCCCTAAGGGACAAGTGTCCTCTATCGAAAGTATTTTCTCACTGCATTTTTGTACTTAAAGGAAAGTAGTTTTTTTGCTCACTCTCATGACGGTCGGAATCTGTATGTTTGCTTTATATTTCGGAAAACACTTCTGTTAAAGTCTATTAAAGTTTGCAACATTTGAATGACCTGGCCTTCCAAAATGTAAACAGTTGCTtggatattttatataatttctgaatgaatgaaatgtgcTTTGGCTAAGTGGataagaaaatctaaatatattatagGTCTTTAGAAATATGGAAACCTGTTTCTGCcacaggattaaaaaaaaacaacagggtTTTATCTcagaatttttactttttttctcagaattgcgtaATATGTCgcgtaataataattcaaattcaacattttttttaataagaattgTAAAGTATAAACTCgcagttctgagaaaaaaagtggcagaaaaaatatttaaatttgcaatttctttttttttttttattcagatttttagtGTAGCAAAACATTAGGATTCTTCCAAAATTGAAGAATCACTGGACAAAAGCTGCATATGTGTTTTGAACAGCAATgggagtgagtaaataatgtaaagttTAGATGACCTGTTCCTTTAAGTCTTATATTTATGAAGCTTCTGAGATTTGTCTTACTTAGATACTGTTACGGTGTGATTCAATGGTGAAATATTATGGAGGCAATCATAGTTTGTAAAGATTGTTATATCTTGTGCTTACTTTCCTGTAAACACGCATGACACGCTTTCAGCCCATGCTTCACGTACTTCTCTTAAGTGTGCATGGATGTGCTCTTCAGTGCTGATTCATGATCTTGTGCATGGTTTTTAAGCCGGCCAATGCCATATATGCTCAAACTATCTGCTActatgggtaaaaaaaaaaaaacacatttctgtattCTTGTTGTTGCGTAACATCGGCGCTGCCAAATATGTTTGGATCTGCACTCAAACagtatttgtttacattcttttgaaatattttaaaacctgcCATACACTGTGTCGGACATTTTCATATGATAGCAGTACCACCTAAACCGTAATGTGGGAGAGGCGAAGAAAGGTAAATCCTGTATACGAACATTGACTCTTGAGTAGATTTGAGGAGGTGTTGGCACAAGCACGCCGTGACCATCAGCGCTGCCTCATTTTCAGTGGGATTGTATATGCATCTGTGCTCTTGCAGTTATTGTAAACATTAATGCTGTAGATGTTCTGCCCTTGTGTTCTTATTTCCCCTTATTTTTGTGTACATTCCTATATTTCACAAATGATCTATtgctattttgtgtttaaagtaaGGCTACATGTATAATGCAGAATACACGCCATACTAAACAGATGAATATTTTGTTACTTGTGCAGTGTTCCTCCATCCCGTCTCCTCTATTTTCTTCCTGCCCATTTGTATAATATTGCCAAAtaagatatttaataatttatgtaagTATAAGTTGCAATGGTGAAAACACTACTTGTCCCCCCCCCCCAGTGAAGTTGCTGAGTAGTTTACACATTAAAGCTTAATGCACTACAcctgtacactgtaaaaagctGTGGGtaataaagctttttcattTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99649 lncRNA downstream 30876 3387931 ~ 3388185 (-) True G67384
TU99648 lncRNA downstream 33851 3384867 ~ 3385210 (-) True G67383
XR_006251754.1 lncRNA downstream 173164 3245369 ~ 3245897 (-) True LOC122351420
TU99634 lncRNA downstream 179476 3238663 ~ 3239585 (-) True G67377
TU99500 lncRNA downstream 373754 3017056 ~ 3045307 (-) False serp2
TU99694 lncRNA upstream 814 3437757 ~ 3459238 (-) False dgkh
TU99787 lncRNA upstream 143899 3580842 ~ 3581209 (-) True G67475
TU99809 lncRNA upstream 205504 3642447 ~ 3671076 (-) True G67490
TU99812 lncRNA upstream 235584 3672527 ~ 3742733 (-) True G67491
TU99867 lncRNA upstream 392075 3829018 ~ 3829643 (-) True G67537
XM_043249723.1 mRNA downstream 7168 3404812 ~ 3411893 (-) True tnfsf11
XM_043248479.1 mRNA downstream 55461 3347791 ~ 3363600 (-) True LOC122351418
XM_043248608.1 mRNA upstream 813 3437756 ~ 3507292 (-) False dgkh
XM_043248610.1 mRNA upstream 813 3437756 ~ 3507291 (-) False dgkh
XM_043248607.1 mRNA upstream 813 3437756 ~ 3507291 (-) False dgkh
XM_043248605.1 mRNA upstream 813 3437756 ~ 3507291 (-) False dgkh
XM_043248606.1 mRNA upstream 813 3437756 ~ 3505611 (-) False dgkh
TU99606 other downstream 224569 3189847 ~ 3194492 (-) True G67358
TU99607 other downstream 226121 3189847 ~ 3192940 (-) False G67358
TU99608 other downstream 226121 3189847 ~ 3192940 (-) False G67358
TU99433 other downstream 582438 2814935 ~ 2836623 (-) False LOC122352064
TU99416 other downstream 620467 2783599 ~ 2798594 (-) False LOC122352168
TU100077 other upstream 683605 4120548 ~ 4121839 (-) False G67668
XR_006251761.1 other upstream 1358008 4794951 ~ 4822962 (-) False LOC122351499
XR_006251762.1 other upstream 1358010 4794953 ~ 4822962 (-) False LOC122351499
TU100372 other upstream 1419707 4856650 ~ 4945665 (-) False LOC122351456
TU100414 other upstream 1522774 4959717 ~ 4983747 (-) True G67863

Expression Profile