RNA id: XM_043248191.1


Basic Information

Item Value
RNA id XM_043248191.1
length 4858
RNA type mRNA
GC content 0.48
exon number 30
gene id LOC122351256
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8176835 ~ 8202936 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACATTCGTAGCATGGGCCAAAATGATTCAGTTGCATGTAGAAGCAGCAGGCGGGGGCACAAATGCATTCTGAATTAAAGAGAAATGGTCGCTGAGGAGAGGGGAGCTCGGCCACAAACTGAGcattcatttaaagaaaCGCAACAACTCCACAATGAAAGATTTTGTCCTCTCTTTGCTGAGTCGTGGGTATGGCCAAGTTGTGCCAAATGAAGATGGTCATGATGGAAGGCTGGAGGTTTGTTTTGAACCAGagGACTACTTCAACTGGAAATCCCAGCCTCCATTGCTACGTCTTACCAGCAGCGGACGTTTTTTTGGAGGCATGGAACCAGTTCCTCCTAAAACCTACAGTACGAGGAGAGGTCCTCTTATCCTGTATTCAGAGGATCTCGCACGGGCATACAAGACTGGCCAGGTTAACAGGAAGAGAAAAGCTCAGAGCTGCCCAAAACAGGAAGTTGAGAAGCAGCTGCATACACTACAAGACCTGACTGGAGCTATCTTGGCTTTTGGAAAAAAGTCAGCGGCTGGATCTCTTGCCGGAGTAACGCACCCCTTACTGCCAGACACTAAACATGCTATACAGAACATCAACACTCATCCCAGGCCCGGAGAGAAGAACTATAATTCAAgccaggtcaaaggagaaaaaaataatcagatcagATATCAGCCACGTTTTCTCTGTTCCCCTCGGCCCAAAAGGGCAGACCTGGGTCCTCTACCACCCATAACAGATGCTTCAATACACGTACAAATCCAGGAGAGAAGTCAAGCGGCACCAGATGAACAAATGGCCTTTAAGaccaaacaacaaaaagatCCACCGAAAGAGAAgccaaaagagagaaagagagcagggAGTCTGAGGATCGTAGTCGACATGTGCAGAACTCAAATGAGTCCGATCCCTGAGACAGAACCAGCACATCAGACTGAAGATCAAACAGTGAtgccaacaaacaaaaaaatcacctcCACAATACTCTCACATGCGATCGACCCTCGTAAGGATGTAAACGGCCGTGGGAAGCGCAGTCGGATGGAGAGTGGAGGTGGAGTTGCAGAGGTGTGCGCTGTGAGGTCAGTGTGTGTGGATTCGTCTTTGGAGTACAGCCCCCTCTCAAGGGTCAACTACTACGGTGGACACATGGAGGGATCCCGCCAGAtgaGACACTGTGGAGGTGAAGCTCACACGAGGAGAGTGAATACAGAAACAGATCCCAGCTTCACTGCCTTCCACTTACCTCCCATTAACCAAGGCCCACTGGTCAACTCAGGCTCTGATATCACCTTAACAATGaatcaaacagaaataaaagagaaaaaaagcagcTGTGAGAATTTACCAAAAAGGGAATTACACATACATCTCCCAGACATCAAAGTGGGAAGTGCACACGAAAACCCCTCCGAGAGACGCATCCACAGCAAAGTGCTGCTGCTCTTCCCCgcacaaacagaacaaacagacaCCCATCAGCCAGATGATGACCTCCACGGGACCCCTGTTGAGGAGACAGAGCCACATGGTGATTTAGAGCATGCAGACCAAGGAAAACAGGACCCTCACTCTGACAGCAAGTGCAGAATTATAGAGATGGATCTTGGAAATGTCGTGTGGTCTGATGATCTAGAAAAAGAAGATCAACATCCCCCTCTTGGTCCATTGCCCCCGCTGGTGGGCAGGAGGGGTCCAGGTAAACAGAGCTCCATGGCTGTGTACAGACAGAACCTACACGACCCTGCAGACACACCAGAAACACAAACAGGACACACTAGAGGCTGCATCCCTCTGGAGCTCAGAGaaTGGCAGGGAGGCAAAGCAGTGGGCACCCTAATAATGGGTCCTGACGGTGAAATCATACGCTTGTCTCTCTGGGATCCCGCAGTTGACACTGAGGACCACCCAATAATGGGTGATGTCACACAAGGTCACGTTCTTAAAGTTTTGACTTCTGAGGGAGATTTGAAACAGCCTTGGACGATCCTCATACAGGACCACAACACAGAGGAAGAGGAAGACGACGCAAGTAACACTGAAGAAACTTCTTCAGACACCGAGAAGCTTGACTCTAGTCATGAGTGGTTTAAGGTCAATAAAACTGCAGAGAAAATTAACGCTAAGGAGAGGCGGCATCAATTAGGTTCCTGCAATAAAACAGTTGGGAAGAGGCAGGTGCTTAAGGTCACCTCTCGCAAAGAAACTAAtgcagaggaggaagaggaagaagatgaggagtatgaggaagaggaagaagaagagtatgaggaagaggaagaggaagaagaagagtatgaggaagaggaagaagaagatgaggaagtggaagaagaggaggagGTATCTAGGAAAGCTTGCACACAACAGAATAATGCAGTAAATGAAGGGAACGATTTAGGCTCTGACCGTCAGACTTTTCAGAAACAAAGGGTGATTAAGGTCAAATCGCGTTTAAAGCAGACTAAAGCCAAGAGAAACGAAGATTGTTTAGACGATGACAATGAAATAATCCAGGAGGAACAGGAGTATAAGGTAAGATCGCGTGCAAAGAGGGCGAAAGCCAAAAAGGATGCCTGTTTAGGTGCTGGCAGCGAGATCATCCAGGAGGAAGGGGTCTTTAAGGTCAGATCACGTGCAAAGCAGACTAATGCTAAGAGGAAGGATGATTGTTTAGGAGCTGAGGGTGAAATAATCCGTGAGGCACAGCAGACATTTAAGGTGAGATCCCATGCAAAGCAGACTAAAGCCAAGAGGAAGGAGGACTTTTTCGGCTCCGACAGTGAAATAATTCAGGATGAACAGGTCTATTTACCTGAGGAGAGATTAGAGGAAATGAGCAGCTCCACGGCTCACCAGCTCAACAAAACCGGAGAGGGGGCCACTAGGGTGCGAAGAAACCGAAAAGTAAAGGCAACAACTTTACAGCCGGAAACAAAGGTGACACGGGGGTCAAGGAAGTCCAAAGGTGCTGCGCCTGCTATCAGCCCTGAATCAACACACTTCACTTCCAGAGCACATTCACCGCGGTCTTTGTCTCCTGAAGGACAGGCAGAATTACCAGCGGAGGAGGATTTTGACAGAAAAGGTCATTCAGAAAACGCAGGTGGAAGAGAAGACGCGGAACACGCGCTGGTGGAGAAAGTGAAGAAAAATAAGAAGTCTAGTAAGCAAACAGGGAAAACAAAAGGGAAAAGTGTTCAAATTCACGAAGACACCGAGACCCAGAATATCGGTGTCTCCGAGGATCCCGCTTCTACTTCAAAGAAAaagagaaagaaaactggaaaacagaaaaaagaagaagctgaagaagaaaatgaagagCCTATAAAAGCCCAGAATTCAacagttaaagttaaaaagaaaaagggtcAACCAGCGTTTGTTGTAGGAAAACCTCGGCCACAGGATGCTGAATGGATGGCAGATCCAGTGGATGAGCCTGAGAGACCGATGACGCTTAAGAGAGAGGTGACGACTCTCGACTCCGAAGACGAGCAACTAGaaaacacagagaacacaccAGAACACACCTATACCGACTCTGAAGATGACATGGATGCTGATACAGAGACTACAGACACACACGAACTCTCTCCCAGATCAGTTTACAGCACTTACAGATCTCAGCGCTCACTCGTTACAGCTCGTTCAGACGCCAGCATTCACAGATTCTCACAGAGCTCCATCCGAACCGCCTCGATGGGGACGGCGTCCCACTGTGGCCCGTGCAGCCCAGCACCCCTGTCTCTCATCCACATGCCTCCTCAGTCAGCGCTCCCTTCGGCCTCAGACATCAGCAAATCTGAGCCAGGCACTGACGTTAAAAGCATTGAGGTTTCAACTAACCAAGCAGACAAAAAAGCTGCAGCGCTGGCTGAAAGGGCCGAGCGCCGTCGTCTGGAGGTGGAGAAGAAacggagggagagagaggaggaaaagaaGAGACAGCAAGAAAAGGAAGCGACAGAAGAGAGGCTAAGACTGGAACTGGAAGACGAACAGAGGAGAAGAGCAGAGGAAGCAAGATTACAGAAGATCagggaagaagaagagagacaaagaagacaggaggaggagctggagagacagaggagagggCGGGCGGAGAAGGACAGAGAAAGAAGAAGGCAGGAAGAGAAGAGGAGGCTGCTGGAACGGCTCCAGAGAGAAAGGCAGGAAGAGGAAAAACGACAGGCTGCCCAACTGGAACGTGAGCGTTTGGAAGAGGAAGCTCGGAAGGAGGAGGAGCTCAGGAAGCTGTCGGAGATGGATGAGTGCGAGAGACTGGAGTACCTGCGAAGACAGCTGGAGcgggaggaggagaggaggaaagCTGccgaggagaggaggaggaaggaggaggaagCAGCCATACACGCCGTGGAAGAGGCCAGACTGCAGGCTGAACTGTTCTCCAGGCAGAGGGCGGCACTGGAGCAGCACTTAAAGTTTCACAGGGGGCTTTTTGTGGAGGCTGAAGGGCTGGAGCAGACACAGGATATCTCTCGGCCCTGGATCTTCTCCTATTTCACCCTGCTGAAGCTGCTTGGCTTGGCTGAGCCCGCACCTGAGGACACACTCAAAGATGTGCTGTAGTTCTTCTTCATGCAGTAAATTCTCACAACTAGTGTTTCAGTTATATTTCCTTCAGTAGGTGAACAAATCAGTGTGAGGTAAACTGCCGGATAGCTCGTATGCTTTCAGATGTCTAACTCTGGCATCGCAGCATATCAGCACTTCTGAATTCTAGACCAAACAGtgatgtaaattaataaaataataaaacaccatgggcattttcatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101216 lncRNA upstream 322557 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 840476 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 875340 7298033 ~ 7301495 (+) False G68397
TU101158 lncRNA upstream 878550 7280767 ~ 7298285 (+) True G68397
TU101189 lncRNA upstream 913122 7262541 ~ 7263713 (+) True G68424
TU101545 lncRNA downstream 917 8203853 ~ 8205963 (+) True G68668
TU101562 lncRNA downstream 19651 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 299820 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 397788 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 623276 8826212 ~ 8827046 (+) True G68808
XM_043249764.1 mRNA upstream 3872 8170166 ~ 8172963 (+) True fzd7a
XM_043248834.1 mRNA upstream 158948 7962407 ~ 8017887 (+) True raph1a
XM_043248743.1 mRNA upstream 238333 7921678 ~ 7938502 (+) True fer1l6
XM_043248750.1 mRNA upstream 256274 7908331 ~ 7920561 (+) False prkag3b
XM_043249064.1 mRNA downstream 138359 8341295 ~ 8342751 (+) True si:ch211-167j6.3
XM_043249065.1 mRNA downstream 138359 8341295 ~ 8342751 (+) False si:ch211-167j6.3
XM_043249059.1 mRNA downstream 140286 8343222 ~ 8349525 (+) True ankzf1
XM_043248896.1 mRNA downstream 163726 8366662 ~ 8426929 (+) True myo10l3
XM_043248897.1 mRNA downstream 163726 8366662 ~ 8426929 (+) False myo10l3
TU100736 other upstream 2211955 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2291082 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2719306 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 2719572 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 2719992 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 138362 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 228209 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 661713 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 939656 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 939656 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile