RNA id: XM_043248234.1


Basic Information

Item Value
RNA id XM_043248234.1
length 2477
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC122351270
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5975136 ~ 5978878 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattccattttaatttatttacttcaatAAACCATTTCCCCCCTGAAAACCGTGTTTTGCCCATTTTAAGGCGTTTACGACCGCATAAGCAAATATAACTGTAAGTAACGTTCTTGCCTTtacacaacttttattttgatagcatGGCAGGCAGCTTAGGCTACTCTATGGCTTCCACGAACGCCAGAAACTGATTTCCCTTTGTTTACAGCATCAGCGGCACCGTCGCTGTCAGTTCGAGTGGTTTTCGCATAAACGTGCACGCGCTTCTCGCGTGACCACAAGTCTCCGTTCGGTATCAAACGCGCTCATCCGTGGGGGGTTTATACCCGGAGCGAGTCGATCGCGGGGGACGATGTTAACGGTTCTGGCGgTTTGAGGGTGCGCGTTCATCTCCGAGTCGCCCGACATGTCTCACTCCTCCAAGCCCCGATCCCACCCCTGCGGCCTTTGCGACAAGTCGTTTCCCCAGATCTCCATGCTCGCCAAGCACCAGCAGGTCCACGCCGAAGACAAGCCCTACAAATGTCCCTACTGCGACAAGTCTTTCACTCTGTCTTCTCGTCTGGTCCTGCACAAACGCACCCACGCTGGGGAGAAGCCTCACACCTGCCGGCTGTGCTCCAAGACCTTCATCTCTTCGTCCCACCTGTCCCTGCACCTGCGCTCGCACACCGGCGAGAGGAAGTACAAATGCAGCGTGTGTTCCAAAATGTTCATGCAGTCGTCGCAGCTGATGCGCCACAAGAccatccacaccggagagaaacccttCAAATGCCCGGATTGCAATAAATGCTTCGGGCGCGCCTCGCACCTGAAAACCCACCGAAGGCTCCACACCGGCGAAAAACCCTTTAAGTGCACGCAGTGCGACAGGGCGTTCACGCAAAAGGCCGGACTCATTATACACTTGCGCTTGCACACCGGTGAGCGCCCTTTTAAGTGTGACAAATGCGGCAAGGCCTTCCGTACCTCAGCCCATCTGCTCAACCATCAGGCTCTGGAGCTGGGAGAGGGCAGGTACGTCTGCGCCGCGTGCAACAAGGGCTTCCGGTCGGTGTCCATGCTGAAACAACACGAGAAGAGCCACCAGGGCGGCGGGATGCTGTGCTGCAGCGTGTGCTCGGGGCCCTTCGCCCCTTCCTCCTACCTGCAGCTCCAGGTGCACTTGCGAAACGGAGAGCAGCTCTTCCACTGCAAGGTGTGCAACAAGATCTTCGCGAAGATGTCCACTTTCGAGAAACACTGCAAAAGGCACCAGGCGGAGGCGGACGGAGGCGAGGACGAGGAAGCGAAGGAGGAGGATACCCGCGACCCCCCGTTCGAGCTGCATGCCGCCGCGTCTCCATCGGCGTCCACGTCCGAAGTCAACACGCGCTCCAAAACGAGAGCCAAAATTAGGAGCACGATGGAAAGCTCGTGAGAATTCGTGTTCGCTTTGtgtctttttgtgtgtgatatAAACGATGCTTTCATATGCTCTTAGCTGACCACGAGCGCTTGCTTTTGCACATGTTTTcacaatttcttttattattcttttgtcaaaaaaaaaaatggtacgGTATCTTATCAGCTTTGAAGATGCTGGCAGTGCATAGTTAGTTTAAATTCCACTTTGTGTGGGGAGGAACCGATTCTTTACTTCGTTTTGCACAATCCCatgaaaaatactaaaacgtagtactgtacatactgtatgtaaaaatCTAAGAGAATCAGGAGGAACAAAGTGTCCGTTCTGCTAAGAATGTAATAGCTATTCAGCAGAAATCAGCACAGAACATGTTGAAACACGTTCAGATGGGGCCAGACCATTTCGTAATGCACAATTGCTGAactttatgtttatgtaatacgGTGTAATACTGGTGTGCAATCGGCTGCTTGCAACCGACGAATACAGAGGATGTATAAACGCTAGAAGCTTTGTCAGTTTATGCAGGATTATCATAATCCACAGTGTATTATGCAGCGAGCAATGATCGATTATTCTGctaatgcaacatttatttaaaataaaaacgtgaaatattgtaaaaataaatttctgCAGTCGTTTCCGTTTTATCGCaaaatttatattgtgtatGCCGCGGCTGACGTCCGCCTGGGGGTCAGCGTATCTAAACAATGAATATTCAGCTATGTGCATTTTATGTGCACACGTAGAAGTTTATTGTCGTTTTTTTAACtgattgaatgcatccttgttgatTGTtagtttctttcaaaaaaccCTAACTGACCTCAAACATATGAACTGTGAcatgtttcattttcaaaggCACACATATGCTGTCCAACCTTAGGGCGGGAGCGTATAACGcatgacatttatttagttattttgtataagttttggaaaacaaaacaaaatggggaTGATTTTGCCCTCTTACTTCCAGTGAGTCAAAATAACTTGCTATGTTCATCCAGCTTtatatgaaatacaataaaatgttaacaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100695 lncRNA downstream 168809 5805940 ~ 5806327 (-) True G68082
TU100657 lncRNA downstream 239353 5735337 ~ 5735783 (-) True G68055
TU100655 lncRNA downstream 239964 5734924 ~ 5735172 (-) True G68053
TU100650 lncRNA downstream 259499 5715341 ~ 5715637 (-) True G68048
TU100602 lncRNA downstream 576997 5397479 ~ 5398139 (-) False LOC122351915
TU100773 lncRNA upstream 66237 6045115 ~ 6047596 (-) True G68120
XR_006251731.1 lncRNA upstream 138973 6117851 ~ 6142682 (-) True LOC122351301
TU100892 lncRNA upstream 262444 6241322 ~ 6241602 (-) True G68189
TU100973 lncRNA upstream 701217 6680095 ~ 6683011 (-) True G68265
TU100974 lncRNA upstream 718808 6697686 ~ 6697893 (-) True G68266
XM_043248541.1 mRNA downstream 44000 5912855 ~ 5931136 (-) True LOC122351463
XM_043249311.1 mRNA downstream 75493 5888893 ~ 5899643 (-) True LOC122351906
XM_043249312.1 mRNA downstream 75495 5888893 ~ 5899641 (-) False LOC122351906
XM_043249341.1 mRNA downstream 98745 5875474 ~ 5876391 (-) True LOC122351923
XM_043248540.1 mRNA downstream 99769 5874669 ~ 5875367 (-) True LOC122351462
XM_043248543.1 mRNA upstream 90867 6069745 ~ 6087019 (-) True LOC122351466
XM_043248544.1 mRNA upstream 109591 6088469 ~ 6098804 (-) True LOC122351467
XM_043249430.1 mRNA upstream 120193 6099071 ~ 6099912 (-) True LOC122351979
XM_043249183.1 mRNA upstream 340212 6319090 ~ 6477546 (-) False myo16
XM_043249184.1 mRNA upstream 340212 6319090 ~ 6464268 (-) False myo16
TU100767 other downstream 52316 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 605547 5349955 ~ 5369589 (-) False LOC122351925
TU100497 other downstream 866749 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 945661 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 960323 5010513 ~ 5014813 (-) True dbi
TU100782 other upstream 64397 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 120469 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 268022 6246900 ~ 6261069 (-) True G68188
TU101110 other upstream 1092107 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 2035571 8014449 ~ 8018105 (-) False LOC122351623

Expression Profile