RNA id: XM_043248238.1


Basic Information

Item Value
RNA id XM_043248238.1
length 3106
RNA type mRNA
GC content 0.46
exon number 8
gene id nr4a2a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 2494481 ~ 2499298 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTGGCAGACAGAGCTCTACATGCCAGTGTTGAGCTCCGCGCTCTGCGAACCACACGCCGTACTGgacatttacacacatattcTGCATCACAACCTTATGGATACAATATAGTTTTACTGATGGTCTACTAAGAGGGAGAATCCAGAGCTGACTCGTTTGTCTTGAACTACGGTATTAAATTTCACCTGATATTATCAACTTCACCGCGATCTGCAGAGGAACAGTCTCACGACTGAAGCCATGCCCTGCGTCCAGGCTCAGTATGGCTCATCCCCGCAGGGCGCGAGTCCTGCGTCTCAGAGCTACAGTTATCACACCACCGGAGAATACAGCTGCGATTTCCTCACGCCAGAATTTGTAAAGTTCAGCATGGACTTGACCAACACCGAGATCACCGCCGCAACCACCTCTCTGCCAAGCTTCAGCACCTTCATGGACAACTACAACACCGGTTATGATGTAAAGCCGCCTTGTCTTTACCAGGTGCCCCATTCTGGAGAACAGTCCTCTATCAAAGTGGAGGAAGTCCAGATGCACACATACCATCAGCAGAGCCACCTGGGCCCGCAGTCAGAGGAGATGATGGCCCACTCCGGGCCTATGTACTTCAAACCTTCCTCACCTCACGCTCCGGGAACAGCGAACTTCCAGGTTCAGCCCAATCACATGTGGGAGGACCCGAGCTCCCTGCACACTTTTCATCAGAACTATATGACCACGCATATGATAGATCAACGCAAGAACCCCGTGTCCAGGCTCTCCCTCTTCTCCTTCAAGCAGTCTCCACCTGGAACCCCTGTCTCCAGCTGTCAGATGCGTTTTGACGGTCCTCTCCACGTGTCCATGGGGCACGACAGTCCCGGAGCGCACCGAGCCCTGGACAGCCAGAGTTTCGCAGTGCCCAGTGCCATTAGGAAACAGGCGGGAATAGCCTTCACGCACTCCCTACAGCTCAGTCACGGCCATCAGCTGATGGACAGTCAGGTGCCGTCACCCCCGTCTAGAGGATCTCCGTCCAGCGAAGGTTTGTGCGCGGTGTGTGGGGACAACGCGGCTTGCCAGCACTATGGAGTCAGAACGTGTGAAGGGTGCAAAGGTTTCTTCAAgCGCACAGTACAGAAGAACGCCAAATATGTATGTTTAGCCAATAAAAACTGTCCTGTTGATAAACGCCGAAGAAACAGATGTCAGTATTGCCGATTTCAGAAGTGCCTGGTGGTTGGAATGGTGAAAGAagTTGTCCGGACGGCCAACTTAAAGGGTCGGCGAGGCCGTTTACCCTCCAAACCCAAAAGTCCGCAGGAGTCTTCGCCCCCCTCTCCGCCCGTCAGTTTGATCAGCGCTTTGGTCAGGGCTCATGTGGACTCCAACCCATCTATGAGCAGCCTCGACTACACCAGATTCCAAGCCAACCCAGACTACCAACTGAGCGGAGATGACACGCAGCACATCCAACAGTTCTACGACCTCCTCACCGGATCCATGGAGATAATCCGCGGATGGGCAGAAAAGATCCCCGGGTTCACCGACCTGCCTAAACCGGACCAGGACTTGCTGTTCGAGTCTGCCTTCCTGGAACTCTTCGTGCTGCGCCTGGCGTACAGGTCCAACCCGATGGAAGGCAAACTCATCTTCTGTAACGGAGTAGTGCTGCACAGGCTGCAGTGCGTCCGAGGATTCGGCGAGTGGATTGACTCTATAGCGGAGTTCTCGTCTAATCTCCAGAACATGAATTTAGACATATCTGCTTTCTCATGCATCGCCGCACTAGCCATGGTCACAGagAGACATGGATTGAAAGAACCCAAGAGAGTGGAAGACCTTCAAAACAAGATAGTAAACTGTCTGAAAGACCAAGTCACCTTCAACGGAGGCGGCTTGAATCGCCCAAACTATTTGTCCAAACTGTTGGGTAAACTGCCTGAACTGCGCACACTGTGCACACAGGGTCTGCAGCGCATCTTCTACTTAAAACTAGAAGATCTGGTCCCACCGCCAGCAATAATCGACAAACTCTTTCTTGACACTCTGCCCTTTTAAACCGcgagaaaaggagaaaaaaaaactttcaaacaaCCTCAGAGAACTTCCACTGACTCTCTTGAAAACTGAAAgtctaattctttttttttttttttcccaattcaCCAACCATTGCCAAATGACGTTTCGGGAAAAAGGATTTAACAATCTATAGCCTGGAAAACATGACGcgaaataatgataatgataccTTTTGTCATCGGCAAGTTATTTTGCCCCtttatcccaaaaaaaaaaaaaaaaaaaaaaactaaacaaaaaacaaaacaaaaaaaaactaccgcCACCGAGTATCTCAGAacgcagagaaaaaaagagggggactaaagtaataataatataagaaattataataaaagacaCATATTATTCAATAGTATGCCTGATTTTGAACAACGAAAAATATCTCGCCACTACTAATCATTGTTAACTGCAAACGTCTGTATTCATGGAAAATCAGAGTAGAGTGTACTATACACCATTTCTATATACCTATTCAATAGATTTATGTGATTTATATGATGTGTATAAAGCTTGTacagagacttttttttcttttataactTGTGCCTGTGTATCTCTGTCAGGTGGAAAGGAGACGCATGTTGTAGAGGACTCTTGTCTCTATTACACACTCTATATTCCGGACACTATGTAGTCTGTTAGATTTTTATAAAGATTCGTAGTATTGGGGCAACTTTTAAATATGGCACatatggataaaaaaaacagtatcatcTGTACAGGTAAAAAGGGACCCATAGTGTTTGTAAAATTGTCAGACATTCCTCGTTTGTATGTGTTGtatgtattgttgttgtttaatataaacgtttatatatttattttgagttcGCCGTTAAAGCATGGTGCAGTTGAAATGATTTCAGGCGCATCACCGTCGTCTTTGTTTAATGTCTTACATGTGATTTTATTTGCCATATTCTATTCCTGTAGGTGTGTGAAGATAATCACTGCCTTTTTCTATGGTTTAACTAAATATACTGCAACTCGTTCGGTTCCGAATCCGAATCAAACTTcatgagaaagaaatatttaa

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021884 forebrain neuron development biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08558 NR4A2, NURR1; nuclear receptor subfamily 4 group A member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99258 lncRNA upstream 362085 2131962 ~ 2132396 (+) True G67097
TU99218 lncRNA upstream 407676 2086282 ~ 2086805 (+) True G67065
XR_006251725.1 lncRNA upstream 408303 2083592 ~ 2086178 (+) True LOC122351283
TU99224 lncRNA upstream 591298 1895482 ~ 1903183 (+) True G67071
TU99389 lncRNA downstream 142321 2641619 ~ 2654476 (+) True G67187
XR_006251721.1 lncRNA downstream 418544 2917842 ~ 2924413 (+) False LOC122351269
TU99463 lncRNA downstream 418565 2917863 ~ 2924636 (+) True LOC122351269
XR_006251720.1 lncRNA downstream 456046 2955344 ~ 2957198 (+) False LOC122351258
TU99473 lncRNA downstream 456102 2955400 ~ 2957197 (+) False LOC122351258
XM_043248142.1 mRNA upstream 235866 2254557 ~ 2258615 (+) True LOC122351218
XM_043248592.1 mRNA upstream 292767 2145505 ~ 2201714 (+) True LOC122351505
XM_043248603.1 mRNA upstream 628874 1861809 ~ 1865607 (+) True ndufa4l2a
XM_043248938.1 mRNA upstream 758161 1713813 ~ 1736320 (+) False bpifcl
XM_043249416.1 mRNA downstream 399865 2899163 ~ 2908133 (+) True pou1f1
XM_043248229.1 mRNA downstream 427068 2926366 ~ 2930420 (+) True vgll3
XM_043248231.1 mRNA downstream 427068 2926366 ~ 2930420 (+) False vgll3
XM_043248230.1 mRNA downstream 427068 2926366 ~ 2930420 (+) False vgll3
XM_043248232.1 mRNA downstream 427068 2926366 ~ 2930420 (+) False vgll3
XR_006251792.1 other upstream 765086 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 1359492 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 1634325 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 1689472 797133 ~ 805009 (+) True G66727
TU98627 other upstream 2032452 459574 ~ 462029 (+) True G66657
TU99551 other downstream 695497 3194795 ~ 3196521 (+) False LOC122351419
XR_006251861.1 other downstream 1414340 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 1448738 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 1482229 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 1621229 4120527 ~ 4125450 (+) False scrn3

Expression Profile