RNA id: XM_043248250.1


Basic Information

Item Value
RNA id XM_043248250.1
length 2543
RNA type mRNA
GC content 0.43
exon number 9
gene id pofut2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19636451 ~ 19642933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTTTACGGTTATATTAAACTTTGATAGCTGCGAAAAGGAGCGAACGCCTATATTAAACCGGGTCGGGAAAGAGGTGACGGAGTTGCTAGGCAACTGTACCGACGCCGGAAGTGCGTGGCTACAAAAGACATGGCGAACAAGAGGGGAACAGCTGTGCCTGCACCCTCTCGTGATATTTTACGATCTCATTCGGTATTAATCCTtgcctttttattatataaattcgCTTCCGCTTCAGAGGGCGATGCATTTCGTGCCGGACAGTCGATATTGTCTCCGGTGGCTGCGGCATCACGGGATGTTCGATACCTCCTGTATGATGTAAATCCACCCGAGGGCTTCAATCTTCGCAGAGATGTATACATTCGCATGGCCTCTTTGCTGAAAACGCTGAGGAAAGAGGGCGACTGGGTGCTAGTGCTGCCTCCATGGGGTCGCCTGTATCACTGGCAGAGCCCTGATATACATCAGGTTCGAATCCCGTGGGGGGAATTCTTCAGCATAACCAGTCTGCAGGCTAACATACCAGTCATGGAGTATGAGGAGTTTATTGCCGAGTCTGGGGGTCCCTTCATTGACCAGATCCTTGTGCTGCAGAGCTATGCAGAGGGCTGGACGGATGGGAAATGGGAGGAGAAGGTGGATGAACGAGTGTGCATCGAAAAGCTAATGTACTCAAAAGACAAACAGGGTTATTACAGaGGTTGGTTTTGGGGTTATGAGGAGACCAGAGCGTTGAATGTCACCTGCTTATCTTCTCAGGGACATGCCTCTATCTTGGCTCCTGTCTTACAAAATAACTTAACCGCCGTGTCAGTAATGCTGGACAGAGCTGAGACTGTCCTTCATGACCACTATGCTGGGAAAGACTATTGGGATACACGGCGAAGTATGGTGTTTGCCAAACACCTGCGTATCATAGGAGATGAGTTTAGGGCCAAGTATCTCAACTCCACAGACAAACAGGACCAGACCTCGTACAACGAAGACTGGACTCGAATGAACAACAGACTGGGCAGCGCTAAGGGAGGCCCTTACCTGGGAGTGCACTTACGTAGGAAAGACTTCATCTGGGGGCACAGAGAAGACGTGCCCAGCCTCAAAGGAGCAGTGAAAAAGATACACAGTCTCATGAAGAAGCACAAGCTTCAAAAAGTCTTTGTTGCCACTGATTCAGATGGAGAAGAGCTCGCTAAACTGAAAAGGATGCTACCTGAGATGGTACGATACGAGCCCACCTGGGAGGACCTGGAGCTCCTGAAAGATGGAGGGGTGGCCATCATAGACCAGTGGATTTGTGCTCATGCTAGgTATTTCATTGGAACATCAGTTTCAACGTTCTCTTTTAGAATACACGAGGAACGGGAGATCCTGGGTTTCGATCCTAAAACCACCTACAACCGATTCTGCGGTGACGACGAGAAAGAATGCGAACAACCAACACACTGGAAAATAGTTTACTGATCACACAGAACTTGATACTGATTATTCAGACTATAGGCTATTTGATTTCTCAGATTTAAGAGAATCCtctatatttttaatgcttttgctGACCATGTTGAAAATACAGTCTTTTAATGGAACAGTTGAATATTTACACCCTtcgggccatccaagatgtagatgagagtcttcatcagaacagattaggggaaatttagcattaattaATTTGCTCATCGGTGGCttctctgcggtgaatgggtgccgtcataatAAAAGCTCAAACAGCtgactaaaaacatcactgTAATGCAAAAGAAATTTTGGATAacctgagggtgaataatttttcagctattttttttatatatatttaagggTGTACTATTTGTCCAATGGCAGTGCCAATGGGTTTTCACTGCATAACAAGTTAGTTAAGGAAGGTAAGGTGAGACGTAAGTGGAATATATCAAATAACTTTGATCTCATATCTTGTTTTAGATGTGTAATTTGTATATGCTGCTGCTCTGTTCTCACAGTTCTTTGATTCGGATTGTTGATACTCAAGATGAACTGTGTATAGCACTGTGATCAAATCTTTTATGAAAACGgtcaacattatttttcaccCCTGTTCCCGTCTTTTGAAGTGCTACGTGCCAATTATTTTCGTCTCAGCACATTTTATGCCTTTGACAAATAACATGTCTGAACATCCAGCGTTAGTGTTTGATATTTCTGTCAGTATTGTGCCTGTCTGCTATTTGGACAAATGAAAATAGTGCTTTCACAGACTTTgccatacagtattttttacactcagtaagtgttttttttcccctttcgtAAGATGACGTGAAAGATTCCGGGAGGTGTACAAAACATGTCGGTAAAGATAAGTCTCTGGAATGGAAGCGTTTGTTTTCATAACTTGATGACAGACAGTAGAAGGGGTTTGTCTTGTATATTTCTTCTTGTTCAGAAATGTCGATTTATGTTTACCATTCAAAGATGTACTGTATATTCATCATGTGCAGTTTttctataaatgttttcttggtttattttctaaatgaaattttaatgatCACTTGA

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105981 lncRNA downstream 92604 19458787 ~ 19543847 (-) False G71587
TU105978 lncRNA downstream 92604 19537741 ~ 19543847 (-) True G71587
XR_006251732.1 lncRNA downstream 110861 19519740 ~ 19525590 (-) True LOC122351304
XR_006251749.1 lncRNA downstream 128366 19496912 ~ 19508085 (-) True LOC122351387
XR_006251712.1 lncRNA downstream 177351 19443445 ~ 19459100 (-) True LOC122351235
TU106096 lncRNA upstream 24067 19667000 ~ 19671164 (-) True G71667
XR_006251727.1 lncRNA upstream 31798 19674731 ~ 19681399 (-) True LOC122351289
TU106074 lncRNA upstream 66451 19709384 ~ 19712184 (-) True G71645
TU106115 lncRNA upstream 87803 19730736 ~ 19731239 (-) False ankar
TU106128 lncRNA upstream 148314 19791247 ~ 19791560 (-) True G71692
XM_043248803.1 mRNA downstream 1650 19569168 ~ 19634801 (-) False abca12
XM_043248802.1 mRNA downstream 1650 19569168 ~ 19634801 (-) False abca12
XM_043248801.1 mRNA downstream 1650 19569168 ~ 19634801 (-) False abca12
XM_043248799.1 mRNA downstream 1650 19569168 ~ 19634801 (-) True abca12
XM_043248417.1 mRNA downstream 67691 19546224 ~ 19568760 (-) False bard1
XM_043249043.1 mRNA upstream 41957 19684890 ~ 19708970 (-) False pms1
XM_043249042.1 mRNA upstream 41957 19684890 ~ 19708970 (-) True pms1
XM_043249044.1 mRNA upstream 44901 19687834 ~ 19708970 (-) False pms1
XM_043249045.1 mRNA upstream 44904 19687837 ~ 19708970 (-) False pms1
XM_043249432.1 mRNA upstream 70552 19713485 ~ 19716443 (-) True adat3
XR_006251863.1 other downstream 1066569 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2380960 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2812676 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2812757 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3864587 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 77565 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 153324 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 238891 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 846231 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 846231 20489164 ~ 20503890 (-) True G71938

Expression Profile