Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043248255.1 |
| length | 1315 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 2 |
| gene id | hoxd12a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056707.1 |
| NCBI id | CM032076.1 |
| chromosome length | 26426558 |
| location | 4385439 ~ 4387003 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09297 | HOX_12; homeobox protein HoxC/D12 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU100104 | lncRNA | upstream | 28626 | 4355005 ~ 4356813 (+) | True | G67684 |
| TU100017 | lncRNA | upstream | 163268 | 4219975 ~ 4222171 (+) | False | G67630 |
| TU100015 | lncRNA | upstream | 165929 | 4217050 ~ 4219510 (+) | False | G67630 |
| TU100051 | lncRNA | upstream | 176898 | 4207690 ~ 4208541 (+) | True | G67657 |
| TU100030 | lncRNA | upstream | 220367 | 4162356 ~ 4165072 (+) | True | G67641 |
| TU100146 | lncRNA | downstream | 136283 | 4523286 ~ 4559028 (+) | False | G67717 |
| XR_006251713.1 | lncRNA | downstream | 185571 | 4572574 ~ 4575436 (+) | True | LOC122351246 |
| TU100155 | lncRNA | downstream | 185673 | 4572676 ~ 4575430 (+) | False | LOC122351246 |
| TU100157 | lncRNA | downstream | 185673 | 4572676 ~ 4575525 (+) | False | LOC122351246 |
| TU100192 | lncRNA | downstream | 290447 | 4677450 ~ 4685181 (+) | True | G67752 |
| XM_043248257.1 | mRNA | upstream | 2554 | 4381524 ~ 4382885 (+) | True | hoxd13a |
| XM_043249288.1 | mRNA | upstream | 258426 | 4120527 ~ 4127013 (+) | False | scrn3 |
| XM_043249289.1 | mRNA | upstream | 258426 | 4120530 ~ 4127013 (+) | True | scrn3 |
| XM_043249290.1 | mRNA | upstream | 259992 | 4120527 ~ 4125447 (+) | False | scrn3 |
| XM_043248594.1 | mRNA | upstream | 273214 | 4109650 ~ 4112225 (+) | True | sp9 |
| XM_043248258.1 | mRNA | downstream | 2645 | 4389648 ~ 4392011 (+) | True | hoxd11a |
| XM_043248345.1 | mRNA | downstream | 7713 | 4394716 ~ 4397578 (+) | True | hoxd10a |
| XM_043248300.1 | mRNA | downstream | 11720 | 4398723 ~ 4401072 (+) | True | hoxd9a |
| XM_043249717.1 | mRNA | downstream | 22892 | 4409895 ~ 4413160 (+) | True | hoxd4a |
| XM_043249716.1 | mRNA | downstream | 30285 | 4417288 ~ 4423340 (+) | True | hoxd3a |
| TU100018 | other | upstream | 163268 | 4141054 ~ 4222171 (+) | True | G67630 |
| TU100016 | other | upstream | 165044 | 4217050 ~ 4220395 (+) | False | G67630 |
| XR_006251811.1 | other | upstream | 259989 | 4120527 ~ 4125450 (+) | False | scrn3 |
| TU99910 | other | upstream | 401857 | 3981527 ~ 3983582 (+) | False | G67566 |
| TU99912 | other | upstream | 434128 | 3948036 ~ 3951311 (+) | True | G67566 |
| TU100101 | other | downstream | 23873 | 4410876 ~ 4413142 (+) | False | hoxd4a |
| TU100144 | other | downstream | 170140 | 4557143 ~ 4562602 (+) | True | G67717 |
| XR_006251862.1 | other | downstream | 322050 | 4709053 ~ 4717233 (+) | True | rbm45 |
| TU100423 | other | downstream | 628630 | 5015633 ~ 5018338 (+) | True | c9h2orf76 |
| TU100453 | other | downstream | 753210 | 5140213 ~ 5142152 (+) | False | ndufb3 |
