RNA id: XM_043248257.1


Basic Information

Item Value
RNA id XM_043248257.1
length 1068
RNA type mRNA
GC content 0.49
exon number 2
gene id hoxd13a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4381524 ~ 4382885 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGGCTAACTAGCGACGGAGATTGTTCTCTCTGCAGCTTTCTTGGTTTTGAGCTCATAAAACACGATGTGTTAAGTTACCCCGCGTGTACAAGTAAACATGGAAGCGAGGGGGTTAGAGGAAGCGTTCAGAAGCGTTTACCCGCCGGCCTTCGGCTCGCGCTCAGCTCGGTCGGAGACTCCGGTGTTCTCCGCTTGGACGAGCGCGGAGCCTCTCCCTCCTCGCACCGGCTCCAGCTCCGCTTCTGGATGTAGTTTCGGGGACGGCTGTTGCGGTTGCAAACTTCCACAGAACGCCGCGTTCCAGTCCGGCGCGGCGAAGCGAATTGCGAACGGGCGGTCTGCCGGTAAACCCGTGGATTACGGCGATGGCTGGTTCAAGGAGTTGGCTTTTTACCGAAGTCCCACGGGTTCCTACCCGAGAATCCGCCCTGCTTATATCGATTTACCTGCGCTTCACAGAACGATGCCTGGAGCACCCAGACAGGAGACTCTGACAATGGAAGGCCACCAGCCGTGGAGCTGGCCGAACAATCGACAACTTTATTGCTCCAAAGACCAGACGCGTATCTGGAAACCATCATTAACAGAGGGAAAGGCGGCTTCGTTCTGTCAGCGCGGGAGAAAGAAGCGGGTTCCTTACACAAAACTGCAACTGAAAGAGCTCGAGCGGGAATACAACGACACCAAGTTCATCACGAAGGAGAAGAGACGTCGGATCGCTTTTTCTACAAACCTGTCTGAGAGACAAGTAACTATATGGTTCCAAAACCGTCGGGTCAAGGATAAGAAGGGACCCGAAGGATATTAATCCTATTAAAGATCCGTTCACGCAAACGCTGGCTTACATACTGAAGatgtttgttcatttctttaaaaaaaggtgttttattatttgcatctcgtcttaataatttaaatattcttaaatgtcATTCGTTAGCTACACTGATCTTTCCTTTCGGCCGAAATGTATAGTTTCACGGAAGAGTCTGTAACGCTGGCGAAGAAAAAGcggctaaaatgttttaagcacCAAATAAAGCGTTAATGGCGTCTTTAAATAAT

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100104 lncRNA upstream 24711 4355005 ~ 4356813 (+) True G67684
TU100017 lncRNA upstream 159353 4219975 ~ 4222171 (+) False G67630
TU100015 lncRNA upstream 162014 4217050 ~ 4219510 (+) False G67630
TU100051 lncRNA upstream 172983 4207690 ~ 4208541 (+) True G67657
TU100030 lncRNA upstream 216452 4162356 ~ 4165072 (+) True G67641
TU100146 lncRNA downstream 140401 4523286 ~ 4559028 (+) False G67717
XR_006251713.1 lncRNA downstream 189689 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA downstream 189791 4572676 ~ 4575430 (+) False LOC122351246
TU100157 lncRNA downstream 189791 4572676 ~ 4575525 (+) False LOC122351246
TU100192 lncRNA downstream 294565 4677450 ~ 4685181 (+) True G67752
XM_043249288.1 mRNA upstream 254511 4120527 ~ 4127013 (+) False scrn3
XM_043249289.1 mRNA upstream 254511 4120530 ~ 4127013 (+) True scrn3
XM_043249290.1 mRNA upstream 256077 4120527 ~ 4125447 (+) False scrn3
XM_043248594.1 mRNA upstream 269299 4109650 ~ 4112225 (+) True sp9
XM_043248534.1 mRNA upstream 395562 3981346 ~ 3985962 (+) True cdca7a
XM_043248255.1 mRNA downstream 2554 4385439 ~ 4387003 (+) True hoxd12a
XM_043248258.1 mRNA downstream 6763 4389648 ~ 4392011 (+) True hoxd11a
XM_043248345.1 mRNA downstream 11831 4394716 ~ 4397578 (+) True hoxd10a
XM_043248300.1 mRNA downstream 15838 4398723 ~ 4401072 (+) True hoxd9a
XM_043249717.1 mRNA downstream 27010 4409895 ~ 4413160 (+) True hoxd4a
TU100018 other upstream 159353 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 161129 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 256074 4120527 ~ 4125450 (+) False scrn3
TU99910 other upstream 397942 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 430213 3948036 ~ 3951311 (+) True G67566
TU100101 other downstream 27991 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 174258 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 326168 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 632748 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 757328 5140213 ~ 5142152 (+) False ndufb3

Expression Profile