RNA id: XM_043248258.1


Basic Information

Item Value
RNA id XM_043248258.1
length 1505
RNA type mRNA
GC content 0.48
exon number 2
gene id hoxd11a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4389648 ~ 4392011 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATATTGATATATGGTAATTTTTTTACCGGATCACATGACACAATTACCTCAAGAATCGATCAAGATGAATTGCACGTCAGCGTGCGTTTCCGATTTTTTCTTCCTCGCGAGTCCTATCCGCGCGCATATGGTGCAATAGATGGGCAAAGTTTAACAGTCAAGCAGACGTTTTTTTCCTCTCTAAGGCTAAAAGCGAGCGATGACGGACTACGATGATCGCGGCAACTGTGCATCTAATATGTATTTACCGTACTACGTCTCAGCTCCCGATTTTTCGTCGGTCTCGTCGTTTTTACCGCAAACTACATCGTGTCAAGTCAATTTCCCCTATTCTTCCAACCTAGCGCAAGTCCAACCTGTTCGTGAAGTGACTTTCAGGGACTACGGACTGGATCATCCGAGCAAATGGCATTACAGGGGCAATTACGCTTCGTACTATTCAACGGAGGAGATAATGCACCGAGATCTCCTGCAGTCGACGAACCGAGCggaaatgatttttaaaaacgatTCCGTTTACAGCCACCACGGCGGCACCAACTCCTCGTGCGGTTTCTTCACCAACGTCGGCCGGAACGGGGTGCTTCCGCAAGGGTTCGATCAGTTCTTTGAGACCGTCAGCTCCGAGAAGCCCGTCCCCGAGCAGCCCAAACAAAAGCCAGACGCGGGTGTCCCCGGAGATGCTGCGTGCGATGTGTCCACGGATAGCGCGGAGCAGACCAAACGAGACCCTACGGAGACCGCAGAGGAGGAATCCTCGGTATCAACCTGCGACGAAGAAAAGAACCACGACTCGAGTGCAGCAAAGTCCAGAAAAAAGAGATGCCCCTACTCGAAATACCAGATCCGAGAACTTGAACGAGAATTCTTTTTCAACGTGTACATAAACAAAGAGAAGCGTCTGCATTTGTCGAGAATGCTCAGTCTCACAGACCGACAAGTGAAGATCTGGTTCCAGAACCGGaggatgaaagagaaaaagctgAATCGAGATCGGCTCCAGTATTTCACCGGAAACCCGTTGTTCTGAGAGCCACGGTATTGGCCGAGACGATGAAACCATGGCTATTCGGTCGTGTCGTGATTGCGGGACATCATCCATTCGTCGGACACCTGGGTTATTTTCACGTCGACTCTATGCAAAACACTTGCtatcaaaaatgtatgtgaTCCTCGAAATTCTGCACAAATGATCTACGACAGCGTAATCGCGATGATGGAAATTCCGAGCTCTCAGGAGCATATAGGTACCTCGACAATCTCTCCATACCCTTGCGTTGACGCCCCTGAGACGCGGTagctttgtatttgtatttatttattgtgttttgcacCGTTCCGTTGAAATCAGTTCGAGCGGGCGATGCGTTCGGTTACAACAAATCAGTACGTACTTACGTTGAGGTAGAGCTGTGTATGCATTTATTCGTTTGAAGCATGTAATGTATCTATGTATTAAACCAATAAAAATTACGCCAGATTTCTATCTGCTGCTGTGACGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100104 lncRNA upstream 32835 4355005 ~ 4356813 (+) True G67684
TU100017 lncRNA upstream 167477 4219975 ~ 4222171 (+) False G67630
TU100015 lncRNA upstream 170138 4217050 ~ 4219510 (+) False G67630
TU100051 lncRNA upstream 181107 4207690 ~ 4208541 (+) True G67657
TU100030 lncRNA upstream 224576 4162356 ~ 4165072 (+) True G67641
TU100146 lncRNA downstream 131275 4523286 ~ 4559028 (+) False G67717
XR_006251713.1 lncRNA downstream 180563 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA downstream 180665 4572676 ~ 4575430 (+) False LOC122351246
TU100157 lncRNA downstream 180665 4572676 ~ 4575525 (+) False LOC122351246
TU100192 lncRNA downstream 285439 4677450 ~ 4685181 (+) True G67752
XM_043248255.1 mRNA upstream 2645 4385439 ~ 4387003 (+) True hoxd12a
XM_043248257.1 mRNA upstream 6763 4381524 ~ 4382885 (+) True hoxd13a
XM_043249288.1 mRNA upstream 262635 4120527 ~ 4127013 (+) False scrn3
XM_043249289.1 mRNA upstream 262635 4120530 ~ 4127013 (+) True scrn3
XM_043249290.1 mRNA upstream 264201 4120527 ~ 4125447 (+) False scrn3
XM_043248345.1 mRNA downstream 2705 4394716 ~ 4397578 (+) True hoxd10a
XM_043248300.1 mRNA downstream 6712 4398723 ~ 4401072 (+) True hoxd9a
XM_043249717.1 mRNA downstream 17884 4409895 ~ 4413160 (+) True hoxd4a
XM_043249716.1 mRNA downstream 25277 4417288 ~ 4423340 (+) True hoxd3a
XM_043249762.1 mRNA downstream 155490 4547501 ~ 4555749 (+) True hnrnpa3
TU100018 other upstream 167477 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 169253 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 264198 4120527 ~ 4125450 (+) False scrn3
TU99910 other upstream 406066 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 438337 3948036 ~ 3951311 (+) True G67566
TU100101 other downstream 18865 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 165132 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 317042 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 623622 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 748202 5140213 ~ 5142152 (+) False ndufb3

Expression Profile