RNA id: XM_043248260.1


Basic Information

Item Value
RNA id XM_043248260.1
length 2759
RNA type mRNA
GC content 0.44
exon number 2
gene id gja5a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10060318 ~ 10070885 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCACACTTGTGCTCTATTCCCACAGTGGGACGGGCACAGGGGGTCTGTGCTTTATATGATCTCCAGAAATTTCTGGAGTGTTTTCTATAGAGATACGCTGCCATTTTTCTCCATTGCTCAGTATATCCCCACTGTCATACAGACACCAGAGCTGGGCTACATCTACAGGACCCCCGGGCCACAGAATAACAGCCCGCTCATTCATCTGAAGAGGACAAGACCACAGAAGACTCAACCAAAGACCGTCTCATAAGTCAGGCGTCAGACAGCATTGGCGTGGAGTGATGGGGGACTGGAGTCTCTTGGGTAATTTTCTGGAGGAGGTGCAGGAGCACTCCACATCAGTGGGGAAGGTGTGGTTGACCGTGCTCTTCATCTTCCGTATCCTGGTGCTGGGCACAGCGGCGGAGTCATCATGGGGCGACGAGCAGTCTGACTTCATGTGTGACACCCTACAACCCGGTTGCACCAACGTCTGTTACGACCGAGCTTTCCCCATTGCCCATATCCGCTACTGGGTGCTGCAGATCGTTTTCGTATCAACACCGTCCCTCATCTACATGGGCCATGCCATGCACACCGTCCGCATGGAGGAGAAGCGGAAACAGAGGGAGCAGGAGGAGAAGGGTGAGGAGGGCAAAGGAGAGAAGGAATATTTGGAACAGAAAGAAAGAtctgaagatgaaaaaaaaaagatccgcCTAAAGGGGGCGCTGCTGCAGACGTACGTCCTGAGCATCGTGATCCGCTTGGTCATGGAAGTCACCTTCATTGTTATCCAGTACATGTTGTATGGAATATTCCTGAATGCTCTGTATCCTTGTGAAATGTCACCTTGTCCCAACCGTGTCAATTGTTACATGTCCCGTCCAACTGAGAAAAACGTCTTTATTGTGTTCATGCTGGTGGTGGCGGCCGTATCACTGCTTCTGAGCGTGCTAGAACTGTTCCACCTTGGATGGAAACAGTGCAAGCAATGCCTTCGAAAATATGCTGACAAACACGCCAACGATGTCAacatcaaaaccaacaaaactgGTTCCATGGTCCAACACAGCAACACAAGTATTCCAATGGATCTGCCTGCGACGGCTCAGCCACGTCCCTCCCAAACCTGCACCCCACCCCCAGATTTCAACCAGTGCCTAGCATCAAGCCAAGGTCCAACATCACCCCCTCATCTTCATCACCACCATCTTCATCACATCCATCAATCCTGCCAACCCTTCACCGACCGCCTGGCCCACCAGCAGAACTCCGTCAACATGGCCACCGAGCGGCATCATCACAGCCACGATGATCTGGAGCCGGCTGTGGACTTCCTGCAGATGAGCTACCAGAGCCCCGAGGCTCGAGTCCCGGGTGAGATGACACCCAGCGCCCCCTCCACACCATCCTCCCAACCAGGCTGCTTCAGAGACAAGCGTCGGCTTAGCAAGACTAGTGGGACTAGTAGTAACCGAGTCAGACCAGGTGATCTGGCCGTGTAGGTTGGGTTACAGGGCTGTCCAAGAGATGAGAAGCTTGGAGTGTGAACTAGCCTTAGGATGAGAGATATGGATGTTAGAGGTgtgcatgcttgtgtgtgtatgtgtgtgagtattCTTGAGTGCTGGTACTATATGggatatttcatttatttgggaTAGGAAAGGCATGAACAGCACGAATGGGAGGGTAATGGGAACGTgtaagacagagagagaatctgTATCAGAGCATTTAATATGGTTTCATTGAAACTGTTGTTGTAAGTGTATGTAGATTTTTATGGAGTGGATCAAATAATCCCGAATAAAAGGGTGTTGATGTAtttagatgaatggatggatggatgaatgaaagaTGAAAGGACTACTGAAATAactttgtaacatttataagaCAGTACTGGGTAGTTTTGCACACTGATAAGGTTCAAGGTTATAAGAAAcatagatttgttttattttttgcaactCAAAACACTCCAATCAAACACTTTTTTGAGCCAAAAAGCAATAAAGCACTTAGTAAAGAtcattgcaaacaaaaaaagcaataaaaaatgtgtgaatgtgtgatgATTTTATTATGGTTTCTGAATTTTATTAGCAATAAATGACTACAGAATTTATCTGATTATGCTACAAAAGTACTAcaatatgtgtaaaataaataacagaattcTATGAAATATCCtgatatactttatattttgatctACCTACCACTGATGCAAATATGTGTTAATTATTAACACACAACTTATTTGTTACAGTAGTAGAGCTATAATAAGATATCAAAAGAGGAATTCTCAATTCAGTTTGATATTCAGTTGATATGGAAGACTCGGCaaaggcaaaaaacaaaacaaaaaaaaaacataaaacatacgTAGGTCAATTGAAAGTGCCTTGAAAACAGTAAATCAAACAGAAAAGATGGCAAGAGCAATCACAGCTTaagaaaatataatcatttgatATAGCAATAACAATTGCATTAATAGTCTGAAAACAATTGTTTCTGTTAATGGTAAGCAGGGTTTGTATTTATCAAAGCATGCACTTTCAATGATGTCTGCTCAAATGTATGTTCACTAATGTCATCTTATCTCAAGTGTCAATGAAATTATCTGTCAGTGTTCCATTCAGAAAGATGATTTACTGTCACTGACCTTTCTAAACATTGTTTAGTCTTCTCACGTAGTAATCTCTAATTCTGTTTCCACACAGTCTCTCCTCTGATCTGTTTACagcacacaataaaaaatgt

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005243 gap junction channel activity molecular_function

KEGG:

id description
K07614 GJA5, CX40; gap junction alpha-5 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102062 lncRNA downstream 114516 9913086 ~ 9945802 (-) True G69018
TU102048 lncRNA downstream 168722 9890651 ~ 9891596 (-) True G69004
TU102035 lncRNA downstream 387417 9672572 ~ 9672901 (-) True G68994
TU102028 lncRNA downstream 405751 9654116 ~ 9654567 (-) True G68988
TU102014 lncRNA downstream 407716 9637967 ~ 9652602 (-) False G68987
TU102268 lncRNA upstream 14548 10085433 ~ 10087022 (-) True G69147
TU102250 lncRNA upstream 38090 10108975 ~ 10110243 (-) True G69136
TU102285 lncRNA upstream 46908 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA upstream 65764 10136649 ~ 10138759 (-) True G69168
TU102283 lncRNA upstream 100884 10171769 ~ 10174858 (-) True G69157
XM_043248468.1 mRNA downstream 2558 10051625 ~ 10057760 (-) True acp6
XM_043248247.1 mRNA downstream 66846 9990190 ~ 9993472 (-) True LOC122351281
XM_043248562.1 mRNA downstream 150210 9908191 ~ 9910108 (-) False LOC122351483
XM_043249536.1 mRNA downstream 256726 9677254 ~ 9803592 (-) True igsf3
XM_043249501.1 mRNA downstream 390796 9658403 ~ 9669522 (-) True ttf2
XM_043249100.1 mRNA upstream 21465 10092350 ~ 10096244 (-) False LOC122351801
XM_043249099.1 mRNA upstream 21465 10092350 ~ 10096243 (-) True LOC122351801
XM_043249101.1 mRNA upstream 27195 10098080 ~ 10101728 (-) True LOC122351802
XM_043249103.1 mRNA upstream 69408 10140293 ~ 10149241 (-) False srpx
XM_043249105.1 mRNA upstream 69408 10140293 ~ 10149219 (-) False srpx
TU102057 other downstream 150140 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1719303 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1965471 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2042213 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2911698 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 362622 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 362622 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 362622 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 444387 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 609273 10680158 ~ 10686627 (-) False mrasa

Expression Profile