RNA id: XM_043248272.1


Basic Information

Item Value
RNA id XM_043248272.1
length 1288
RNA type mRNA
GC content 0.38
exon number 4
gene id si:ch211-160b11.4
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17196411 ~ 17198391 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTATTGTGCTCTCAGAAACGTGGCCAGATAGAGACGGCCATAAACCTGTATTATATTAGCTGCACTTGGATCTCACAGCACTGAGAGAATTGCAGCTGAAGAGTTAGTACAGACCAACATTGGTAGGCAAGTTCCCTGTTAAAAAAGTGAGTCTTTGGAGATTTTCGACAAGATGAGAAAATTGTTCTTCTTGGTTCTCACCATAACAGCTTTTGCCAGTCCACTAGTTCAGGATGAGAAGCTTCCTGATCTAGTGGTGAAGGAGCCAGAGGTTGAGAAAGAACTGACAGTAGAGCgcaaagaagaagaagcaggtTCCCTGGTGCAGGATAAAGCTGTTGCAGATTCAGTGTTGCTGGAGCCCGAgacaacagagaaaaaaagagtacCAGAAGAGACACGAGTGATGTTGGAGGAACCTGTGCTAGTGGCAGATTACCTCATTGAAGAGGTGCCAGAGACAATACTACAGCCTGAGCTGGAAATAACCGCCACTGGGCTGGACAAAAACATTGTGGAGGAAGTTGTAGCAGAGTTAGAGtctgaaacaaatattaaagtggacgaaaaagaagaaaatgtagtGAAGGAGGTGCCTACACTTGAGGCTGACTATATTATAGCTGAAGATCCAGAAATGCAAATGGACCTGGAAGGGAAAGATGAAGGACACCGCATATTTTAGCTTAGATGTGTGGGGAAAAGAAAGATATGTGTGATAAAACCAATTATACGAATTGTATACATCATCTGgaggctgaataaataagctttgcatTGATGTACGGTTTGTTAAATATCGtgacaatatttggcagaaatacaactatttgaagatcttgaatctgagggtgcaagaaaataaaaaaaatgtccttatAATTTTGGAAATGACGTCCTTAGCTTGGCATATCACTAATAAAAAAttggttttgatatatttacagtaggaaatgtaaaaacaaaaattttcatggaacatgatctttattatattatatatattctaatgattttggcataaaaaattattttgacccatactgtttattgttggttattgctacaaatatacccctgCTACTTATGTCTGGTTTTGACCCGGGCCAGGGTCACATATGGAAAGATGACTGTATCCTCGGGGTGGTGGACCTGTCAAGGAGTTGTGGTGTATAGAATTACCTGCAAATAATGAATGTACCTTTTcaacaaacatataaaaatttCAATTGAAACCGAAActgaaaatgtctttgaaactgaaaaataaaaaaatgtattaattgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105081 lncRNA downstream 277097 16917224 ~ 16919314 (-) True G71035
TU105039 lncRNA downstream 306982 16886805 ~ 16889429 (-) False cd247l
TU104975 lncRNA downstream 328889 16866492 ~ 16867522 (-) True G70981
TU105028 lncRNA downstream 329989 16866178 ~ 16866422 (-) True G71006
TU105027 lncRNA downstream 330822 16865278 ~ 16865589 (-) True G71005
TU105257 lncRNA upstream 14485 17212876 ~ 17297150 (-) True G71117
TU105275 lncRNA upstream 140729 17339120 ~ 17339530 (-) True G71131
TU105278 lncRNA upstream 142154 17340545 ~ 17340915 (-) True G71134
XR_006251856.1 lncRNA upstream 145325 17343716 ~ 17351712 (-) True LOC122352115
TU105286 lncRNA upstream 165796 17364187 ~ 17368255 (-) False ncam2
XM_043248421.1 mRNA downstream 4269 17188746 ~ 17192142 (-) True mettl21cb
XM_043248292.1 mRNA downstream 20697 17170549 ~ 17175714 (-) False dcun1d2a
XM_043248293.1 mRNA downstream 21620 17170549 ~ 17174791 (-) True dcun1d2a
XM_043248294.1 mRNA downstream 21737 17170549 ~ 17174674 (-) False dcun1d2a
XM_043248291.1 mRNA downstream 21810 17170549 ~ 17174601 (-) False dcun1d2a
XM_043248528.1 mRNA upstream 100854 17299245 ~ 17315818 (-) True appb
XM_043248530.1 mRNA upstream 100854 17299245 ~ 17315815 (-) False appb
XM_043248035.1 mRNA upstream 165802 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA upstream 165802 17364193 ~ 17521559 (-) True ncam2
XM_043248036.1 mRNA upstream 174770 17373161 ~ 17521560 (-) False ncam2
TU104984 other downstream 372636 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 372717 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1424547 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1796974 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1890436 15303103 ~ 15305975 (-) True G70549
TU105258 other upstream 37481 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1371364 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2522107 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2597866 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2683433 19881824 ~ 19893315 (-) False mfsd6b

Expression Profile