RNA id: XR_006251733.1


Basic Information

Item Value
RNA id XR_006251733.1
length 2533
RNA type transcript
GC content 0.47
exon number 17
gene id tmtc4
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15389218 ~ 15399437 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGGTCTATTCTTCTCCACGCGCTAGCAGGAAGTAGAGGCAAGAGGCTCATACAGGGATCAGCCACCATTTAGCCACGTATTAAGcctttattattacagtttgcCTGGTTTAGCGATATCTGCAACGTATTTATTTGACACCGGTGATTTAAAGCTTGTATTGCTCGTCTTCAACAGATTGTAAATCGTCCTCGTCGGCGGGCAGACAGTTTTGACGTCGGTGCACGtttacactattattatttgtgaatcATGTTTTGACGATCGTCATTCTCGCGCGAGCAAAATATAGGAGTAGACGACGTTGAAAGTCTGAATGGTTTCGTATCATTTGCTCGCTTTAACAGTCGGTTGCTATGCATTGCATGCATCTGTGTGTACAGCCATGCAGCGAAGCATGCAACTGTGCTGAGATGTCACATCGCCTTTTCTAACAGATCTCTGTAGTGCATACAGTAGTGGTGGGGCAGAATGAGCAGAGACCACATGAAAGATGGTGCTTTCTGAGCCTTACTGGGATCATCACATCCCCCTGCCAAAATTGGGACCCTTGCACTCTCGGCTGGTCACTGCCTTTGTTGCCCTGATCTGTTTCATAAACAGCTATGATGGGGACTTTGTCTTTGATGATTCAGAAGCCATCATCAATAACAAGGATTTAAATCCTGACAGTCCACTGAGTAACATTTGGAAAAATGACTTTTGGGGAAGTAACTTAAGTAGCAACTCCAGTCACAAATCCTACCGGCCGCTGACTGTCCTGACCTTCAGGATCAACTACCTCTTGGCTGGTGGACTGCATCCGATTGGCTTCCACGTCCTCAACGTTGCCCTCCACTGTGTTATTTCTGTGTTAATGATCGATGTGTTTGCAATATTAATTGGCGGCCTGGTTCAAGACGGAAGAGGGGTGAAACTCAATCTTCCTCCGAAAGCTTCCTTCCTGGCTGCGCTCTTCTTTGCTGCACATCCAGTTCACACGGAAAGTGTGGCTGGCGTTGTTGGCAGAGCAGATTTGTTGTGTGCCCTCTTTTTTCAGCTCTCTTTTCTGGTTTACTGCAAAGCGTTTCAAGGTGGTGATAAAAAGTTCTCAGTGTTGTGGATATTTGGCAGCATTCTTCTTTGTGCTGTAGCAATGCTGTGCAAGGAGCAAGGCATTACAGTTTTGGGAGTGAATGCTGCTTATGATATTCTCATggtttgtaatgtaaatatcTATGAGCTCGCTCACCAGCTGCTGTTCAGGAGAAAATCAGTTGACATTGGTGGGTTGGTGAGGAGCGGTTTGCTTATGAGGTTGGCTCTTCTCTTTCTTGGTGGATCCTTTCTTTTGTATGCGAGGTGGCGAATCATGGGAACTGGGCCTCCATCTTTCACTGAGGTGGACAACCCAGCATCCTTTGCTGAAAATGTCATCTTGAGGaTTGTGAACTATAATTACTACTACTCCTTGAATGCCTGGTTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGTGTGCCTCTGATTAAATCAGCCActgattggaggatggtctggCCACTTTTGCTGTGGTGCTGTCTAATAGGCTTGGTGTACCAAGCTCTGTGCTCACAGGACAGCAATAAAAGAAGGACTCTGACATTTGGCCTTGTACTACTGGTGATTCCATTCCTGCCAGCCAGTAATCTGTTCTTCAGGGTGGGTTTTGTGATAGCCGAGCGGGTGCTGTACCTCTCCTCAGCGGGCTACTGCCTCATCCTGGCCTACACTGTGGGCTACTGTAGCTGCCACTGGAAGAAACACAAGAGGCTGCTGAGAGCGGCCACGTTGACGCTGCTGTGTGTGAACGTGGCTCGCTCTGCACAGCGCAGTCAACAGTGGAGGTCTGAACAGAGTCTCTTCACCAGCGCCCTGTCTGTCTGCCCGCTCAATGCCAAGGTGCATTATAACGTTGGCAAAAACCTTGCTGACAGAGGCAACCAGAGTGCCGCAGTCAAGTACTACAGAGAAGCAGTgagATTACACCCTAAGTATGTTCATGCCATGAACAATCTTGggaatatattaaaagaaagaaacgaGTTAAAGGAAGCAGAAGAACTCCTGTCTGCTGCGGTTCATATCCAGCCTGATTTTGCTGCAGCTTGGATGAATCTGGGTATTGTGCAGAACAGTCTGAAAAAGTTTTACGAGGCTGAACAGAGCTATCGGAATGCCATTcgattcagaaaaaaatacccAGACTGTTATTACAACTTGGGACGTCTGGATGGTTTTGGTCTTGGGCTATTATGTTCATCCTTCCTGTTATGCAGACCTGAACCGCAGTATTGACGCGCTGAATGCCTGGAGGAACGCCACCATGCTGAAGCCTGACCACAGCCTGGCGTGGAACAACATGGTTATATTGCTGGACAACACTGGAAATCTGGCTCAGGCTGAGCTGATTGGAAAGGAAGCATTAAAGATATTGCCAAAAGATCACACCATCATGTTCTCCCTCGCCAATGTCCTTGGGAAACAGGAAAAGTACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104306 lncRNA downstream 114008 15228296 ~ 15275841 (-) False G70503
TU104305 lncRNA downstream 114008 15269829 ~ 15275841 (-) True G70503
XR_006251729.1 lncRNA downstream 127173 15257688 ~ 15262676 (-) True LOC122351294
TU104358 lncRNA downstream 128943 15256988 ~ 15260906 (-) False LOC122351294
TU104311 lncRNA downstream 348119 15036082 ~ 15041730 (-) False LOC122351681
TU104406 lncRNA upstream 19562 15418999 ~ 15421577 (-) True G70581
XR_006251775.1 lncRNA upstream 229446 15628883 ~ 15638436 (-) True LOC122351574
TU104479 lncRNA upstream 242822 15642259 ~ 15644276 (-) True G70633
TU104518 lncRNA upstream 362946 15762383 ~ 15762669 (-) True G70660
XR_006251840.1 lncRNA upstream 548676 15948113 ~ 15953976 (-) True LOC122352066
XM_043248278.1 mRNA downstream 122330 15263879 ~ 15267519 (-) True zic5
XM_043248410.1 mRNA downstream 208172 15179474 ~ 15181677 (-) True si:ch211-184m13.4
XM_043249093.1 mRNA downstream 219179 15164299 ~ 15170670 (-) False gpr183a
XM_043249240.1 mRNA upstream 26010 15425447 ~ 15490245 (-) False nalcn
XM_043249239.1 mRNA upstream 26010 15425447 ~ 15490245 (-) False nalcn
XM_043249236.1 mRNA upstream 26010 15425447 ~ 15490245 (-) True nalcn
XM_043249241.1 mRNA upstream 26010 15425447 ~ 15490222 (-) False nalcn
XM_043249237.1 mRNA upstream 26010 15425447 ~ 15490222 (-) False nalcn
TU104362 other downstream 83874 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1136073 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1449981 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 1576522 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1894204 13473140 ~ 13495645 (-) False gypc
TU104521 other upstream 371984 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 1417703 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 1417703 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1836435 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 3170318 18569755 ~ 18569882 (-) True LOC122352185

Expression Profile