RNA id: XM_043248283.1


Basic Information

Item Value
RNA id XM_043248283.1
length 3346
RNA type mRNA
GC content 0.43
exon number 12
gene id upf3a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 17151898 ~ 17161537 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttattatttaaatgtaatttattaggGACAAATTTAATTGATAATAACTGAGACATTAATAAAGTTACAAAAGATATccagttcaaataaatgctatataaatgtatcataGTTCCActgaaagttattttaaagttgcCGTATTCAAAGGGGCATCTGGCGCCTCCTCCCTGATTGTGCGCCAGGGACGTCATGGGGTCTTTCATATCGGCCCCTGAAGTAGAGCAGAAGTGTCTTTGTTTGGTGCCACTGAAATGTGCAGGCTGTGTCACTCCGGATGCTCTTCAGACGGAAGCTGGCTCGTGAGCAGCAGAATCAGACATGGGCTGCACACCGTCCAAATCCAACATCACCTACTCGCACGTGCGCGTGAGTCGAGATCTGGACACCTGTTCCACGTTTGTGCCCAGTTTAAAGAGCTCCGTTTCCACGCCAGAGAGGCCTTCGCCTCAGCTCTGCATCGAGACGGCCAGCGGGAAGCAAACGTTTCTCAGTGTTCCTAGTCGTGACTGTTTCGGTCGTTCCGTGAGTCAGCCCAGCAGTCCTAGCGTATGGAGCACAGTCAGCACCGGCAGCCCGTTCGGACCGGATCCAGCGTGCGTCCAGCCGAGCTGCACCGACAGCGACTCCGAGGACGACAGCGCGGCTCCCGCCACTACACGATGACTCTCGTGTCCCCTTCACCTTGCTGAAATCAAgagatttattttacttaagtaatatattaaagtttaaCTCTCTAGTATCTAAAGATGAACCAAATATACAATGCCCAAACAAccatattctatttatttaaccttttaaaataatgtagcACCGCTTcgtaaatatgttttgttttataaacgAAATGCACCGAGACATATTTCTGTTGACACGACAAGAGAATAAACGCTAACGCGCAAGCATCGCGGTATTTGGGTGAATTCCCGCGAGAGTTTGCGGATTTCGGACAGCGAAGAGGGCGAAATGGAGATATGAGGTCTGAAAAGGAGCAGAGGACAGGAAGCAGGGAGAGAGGCAGCGTGGAGATCCAGTTCAGGGAGTGTCAGAGGGAGCAGGAAAACGTCGCGGTGAACCCCAAGCACAAGGAGGAGAAAAAGGAGATCTTCACGAAGGTTGTCATACGCAGACTGCCACCCAGTTTATCAAAAGACCAGCTTGAAGAGCATCTGAGTCCTCTTCCATCTTTTGACTACTTTGAGTTCTTCCCCGCTGATCAGAGCTTATACCCGCATCTCTTCTCAAGAGCATACATCAACTTTAAAAACCCAGAGGATATCATTATTTTCAGAGATCGGTTTGACGGCTATGTATTCATTGACAATAAAGgcCAAGAGTATCCAGCTGTTGTAGAATTTGCTCCATTTCAGAAGGTTTCCAAGAAAAAGTTGAAGAAGAAAGATGCTAAAGCAGGAACAATTGAAGaagACCCAGAATATAGGCGATTTCTGGAAAATTACTCTTGTGATGAGGAGAAATCAATGGCAAATCCAGAAACACTCCTGGGAGAGATTGAAGCTAAAACCAGAGAACTCATAGCGAAAAGGACAACGCCTTTGCTGGAATACatcaaaaacaagaaattagAGAAACAGAGAataagagaggaaaaaagagaggAGAGGCGAAGGAGGGAACTGGAAAAGAAGCGACagagggaggaggagaagaggaagcGCAGAGAAGAGGAGAGACGAAAGCGAAAGGAGGCTGAAAAGCAGAAGAAGCTCTCTGAAAAGGAGATCAAGATCAAGCTTTTGAAGAAATGTGATCGTGATGATGACGTGGACTCAGACAGACTGAAAGATAAAGGAGACAGTGGAGAGATGGAGAAGAACAGATGGGAAAAGCCAGCAGGACACACTAAGTCAAAGGATTCCAAGGATAATAGGAGTCAAATCGAGAGTGACAAGGAGCAGCGGGAAAGTCACGGCCGTCGACAAAGGGACAAAGAGCATCGCGGCAGAGACGAGGAATGCAAGCGACAGAGGCATCACTACGAGTTTGACAAATTTATGCGACGCAAAGAGGAGACCAAATGGGGTAAAGGCTACTGCCAGGACAGAGCCAAGAAAGACCAACATCATGGATATTCTTACTGCCCAGAGACCGGAGACAAACTGGGCAAGGAGGATCGAGAGGACATGGGCAGCAGGAAAGAACGGATTCGCAATAAGTCTGTGTTAGTGCATCAGGAGAAAAGGACTTCCCAGTCTGAGGGGCCAGACCAGATAGGAGGGGCTCTGCCAGCAAAGGACCGACCGGCAATGCAGCTGTACCAACCTGGTGCTAGAAACCGAAAGCGGATGGGCTCCGGGAACAAGACGTTTGACTTCCCACCGATCTCTCCCGAACACGGAGGGGAACACTGCTACAAGACGGTCATTGGCACAGGCTCAGAGAAGAGTGTCGacgagtgaaaaaaaaaaaaaaaaaaaaaaccaagacaGGAAGAAGTTTACTTTCAGAAGCAAGGGTCATGCCTGTATAGAAAGAACAGTCAAGATCAACCTTGTTTTCTGTCTCGCTGAGTCTAAGTGTGAGTATAGTGCATTGAAATCCCCTcttaatattttacacacaacGTCAGCAGTGTCATAAATCTAAAATGATCAGCTTCTGTATGCTTATCAAGGGTTCACATCACTTCATTGACAACAATACCTCAGATCAGATTTGTATGCCTTTTGTAGTGCAAGAAATGGTTTCcgttaaaaacaaataaatataaaaataaatatatataaagattttactGTAAAGAAAGCAGTATGTGTTgtgaaatctgtattttaaatatatttaatgggGAACGGGGAACAGagacatattttttgtttaggaATATAAAAACGCTACATTGTATTAATGAAACGTTTAAGCATGCGATtcttaattttacactttttacattgtaatgcCTTTGAATGATGCCTCTATTGTCCCCGATGTACAGACATTGTGGTTTTTCTGTATTAACAAATACATCTCACAACAGGATATAGTAAATGTCAGAGCATCGTTTTACTTGCGGGCCAATAAGAACAAAATTGTTTGTTAAAATTGTCTTCTGTTAGGTCAGAtaacatttttgtgatatttctgAACAGTGTGCATGAAGTTTCGGTCATTCGGTGGTGGGAGGCTACATGGGGTCACATGCCTTACCTTTGATTTGCACTTAAAGATCCCGTCTGTTATTCAAATAACCCACaggtttttagaattttttgttGAGTCCCACAAAAAGTGAACTCTGTAGAATACTTTAAAAAACGTGATACTGTATTTGATGGATTAACCATTTGTGTACAATAAAgatatatgattatataaagta

Function

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14328 UPF3, RENT3; regulator of nonsense transcripts 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105081 lncRNA downstream 232584 16917224 ~ 16919314 (-) True G71035
TU105039 lncRNA downstream 262469 16886805 ~ 16889429 (-) False cd247l
TU104975 lncRNA downstream 284376 16866492 ~ 16867522 (-) True G70981
TU105028 lncRNA downstream 285476 16866178 ~ 16866422 (-) True G71006
TU105027 lncRNA downstream 286309 16865278 ~ 16865589 (-) True G71005
TU105257 lncRNA upstream 51340 17212876 ~ 17297150 (-) True G71117
TU105275 lncRNA upstream 177584 17339120 ~ 17339530 (-) True G71131
TU105278 lncRNA upstream 179009 17340545 ~ 17340915 (-) True G71134
XR_006251856.1 lncRNA upstream 182180 17343716 ~ 17351712 (-) True LOC122352115
TU105286 lncRNA upstream 202651 17364187 ~ 17368255 (-) False ncam2
XM_043248286.1 mRNA downstream 819 17144856 ~ 17151079 (-) True p2ry8
XM_043248289.1 mRNA downstream 947 17144856 ~ 17150951 (-) False p2ry8
XM_043248287.1 mRNA downstream 1188 17144856 ~ 17150710 (-) False p2ry8
XM_043249695.1 mRNA downstream 8541 17137141 ~ 17143357 (-) True asmtl
XM_043249683.1 mRNA downstream 15103 17132470 ~ 17136795 (-) True slc25a6
XM_043248282.1 mRNA upstream 407 17161943 ~ 17170414 (-) True cdc16
XM_043248292.1 mRNA upstream 9013 17170549 ~ 17175714 (-) False dcun1d2a
XM_043248293.1 mRNA upstream 9013 17170549 ~ 17174791 (-) True dcun1d2a
XM_043248294.1 mRNA upstream 9013 17170549 ~ 17174674 (-) False dcun1d2a
XM_043248291.1 mRNA upstream 9013 17170549 ~ 17174601 (-) False dcun1d2a
TU104984 other downstream 328123 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 328204 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 1380034 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 1752461 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1845923 15303103 ~ 15305975 (-) True G70549
TU105258 other upstream 74336 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 1408219 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 2558962 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 2634721 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 2720288 19881824 ~ 19893315 (-) False mfsd6b

Expression Profile