RNA id: XM_043248298.1


Basic Information

Item Value
RNA id XM_043248298.1
length 1987
RNA type mRNA
GC content 0.48
exon number 9
gene id ccdc173
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24728368 ~ 24733782 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGCTTGCTGTCTCTTTAAGGCGTCGCATGACGTCGCCTACATAACTTGCAGGGTTGCTGGGAAACAGTGTAACAAAAGTTAAAACGGTTGCCCAGCAACACAGCACAGAGTGTCCGAACGTGTTACCAACGCTAGCTAAGTTTTCCGGTGTATGGAggaataaacataaataaacatctcaaCGCGTGTCAAGATCAACGAATGTGAgaagatataaaaaaagcagttaTAATGTCAACAGCTTCGATAACGACAGGTGTCGTTCAGTACGGGCGGAGGAAAGGCTCGAGTCAGCAAGTTGAGAGGTCGGAGGTGGAGAAAACAGAGGCGGATCTTCGTCAAATGGTAGTTTTGTCCAAATCGGAATGGCAGCGCCTTCAGGACAGTGTGAACGGAGTCAATCAACACAACAGGAGCGGGATTGAAGCGGCCCGGCAGCGGGAGGCGCTGCGCATGCGCTCTAAAGAGCTCGTAAAACACTGGTCCAACACCATAGCTgGACAACGACAAAAAAAGCTAGAGGCCAAAAAATTTCGAGAAGCGATTGAAGAAGAGGAGCGGAAACAAATCGACATAGAAGAAGCAAAATACCAGGCCAAGATACGAAAGGAGGCCATTGAGCAAGCAAAAACCCAGCAGTACTACCAGACCGACAGAGTCAAAGGCTTCCACagtGCTCTGCTGCTGGCTGAGGTTTTGAAGGAAAGGGAGGCTCAGATCGAGCTGAAGCGCATGAAGCAAAATGCCAGCAAGGACATAGACAGAGATATCTTGGCTCAAATGGCTTGCAGAGAAGAACAGTCCCTCCAGCGGGAACAGCGGAAAGCCCTGCAGAGGAAACAAGACCAGCTGGCCACCGCTGAGAGCGTGAAACAACAGATAAAGGATCGTGAAATGATAAAAGAGCAGGAGAGGCAGGAGGTCAAACGTGCCGCTGAAGAAATCGAGCGCCTCCGAGATCTTCATCTGTGGGAACAGTCCATGAACGAGCgcaagaaagaggaagagaagagaagcgCGATGAAGGCTCATCAGGACTACTTGACCAACAGGGAGCTGGTGAAAGCCACAGAGGCTCAGAggcaggaggaagaggaggagaaacgGAAGCAGCTCGCCAAACATAAAGATAAAGTCATGAAAATGAGGAAGGAGAAGCAAGAGGAAATATTTAGAGAGctccagagacacagagagactaTTATACAGAAGTTAGCAGTGCAGAAGCAGCAACAAATCAGCAACGAGGAAGAGATCGTCGCGAAAGCGGTGGCCGAGCGTGAGGCCAGACAGGCTCGAGAACAGCGcgagaaagaggaaaaacacgCGGCCATGTTAAACTCCATCGCTGCGCACAGAGAGTCCATGAGGAAAGAGCAAGAACGAAACGCAGAAGAGGAGAAACAGAAAGCTCTGGAGATGCTGAATGCGAAGAAGGAAGCAAATAAAATCTTCATGAGAAAGCAAGAACTTCAAGCTCAGAAAGCTAGAGAAGAAGGCAAAACACTACAAGACATCTATATACAAGAAATGGCTGATAAACGTGCAAGGCATCGGCgtacaaaaaaagaagagaaggaCTTCGCCGACAGGAACACCGCTCTCGTCGTTGAGGAGGAAAACCAATTTCAGATATATGCCAGACAGGTCATCGAAACAGCTGGGAAGGCAGGGAGAAACACCTTCCCTCTCGTGAAGGCTGCCAGAGAGGGCATTGGAGGGGGTCTGGGGCCCGTGTTCGGTGGACTTAGACCTAGTTATCTAGTTCATGATGAGTCGGGGGTTGAGATGCCCAGTTACGTGAGCGGCACCACTCAAAACATCAAAGAGCTGAACGAGACCCCTGATATCCAACAGTCCAAGAAAAGACTTGGCTTCACCTCGTAAAACTTCACAACGTCCGGTTGTTATAATGACTCTGGCGTACTATTGCAGTAATAAagattttatgcaaaataattgtcatttctgtgtttagaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108133 lncRNA downstream 157256 24564881 ~ 24571112 (-) True G73084
TU108125 lncRNA downstream 207060 24513094 ~ 24521308 (-) True G73077
TU108005 lncRNA downstream 442678 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA downstream 444203 24281991 ~ 24284165 (-) True G72984
TU107928 lncRNA downstream 747130 23926223 ~ 23981238 (-) True G72929
TU108266 lncRNA upstream 5544 24739326 ~ 24745938 (-) True G73160
TU108285 lncRNA upstream 42378 24776160 ~ 24778655 (-) True G73175
TU108295 lncRNA upstream 67256 24801038 ~ 24801377 (-) True G73179
XR_006251791.1 lncRNA upstream 78534 24812316 ~ 24820878 (-) True LOC122351686
TU108298 lncRNA upstream 78534 24812316 ~ 24821062 (-) False LOC122351686
XM_043249293.1 mRNA downstream 638 24717610 ~ 24727730 (-) True fastkd1
XM_043248836.1 mRNA downstream 61201 24571862 ~ 24667167 (-) True lrp2a
XM_043249351.1 mRNA downstream 169625 24533877 ~ 24558743 (-) False abcb11a
XM_043249350.1 mRNA downstream 169625 24533877 ~ 24558743 (-) True abcb11a
XM_043249352.1 mRNA downstream 169627 24533877 ~ 24558741 (-) False abcb11a
XM_043249729.1 mRNA upstream 21106 24754888 ~ 24758657 (-) True mettl5
XM_043248413.1 mRNA upstream 27759 24761541 ~ 24764855 (-) True cxcr2
XM_043248760.1 mRNA upstream 34503 24768285 ~ 24772259 (-) True LOC122351585
XM_043248763.1 mRNA upstream 51121 24784903 ~ 24786237 (-) True LOC122351587
XM_043249720.1 mRNA upstream 55724 24789506 ~ 24797054 (-) True zgc:92380
TU108001 other downstream 447660 24220522 ~ 24280708 (-) False G72978
TU108002 other downstream 447660 24231235 ~ 24280708 (-) False G72978
TU108000 other downstream 447660 24271455 ~ 24280708 (-) True G72978
TU107931 other downstream 768043 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 797039 23930207 ~ 23931329 (-) True G72930
TU108324 other upstream 293803 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 614996 25348778 ~ 25349640 (-) True G73301
TU108462 other upstream 722632 25456414 ~ 25458742 (-) True G73300
TU108524 other upstream 1056735 25790517 ~ 25793056 (-) True G73347
TU108525 other upstream 1060301 25794083 ~ 25832356 (-) False LOC122351758

Expression Profile