RNA id: XM_043248299.1


Basic Information

Item Value
RNA id XM_043248299.1
length 2098
RNA type mRNA
GC content 0.43
exon number 1
gene id kctd12.1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14275569 ~ 14277666 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCGTGGCAGAAAATGTCAATACTGTAATTTATAAAGCAATGTTTACCCTCGGCGCGTGGGGAAAATGTCTTTGCACTTTTTAACTTATTATCTACATTTAAGTGCAAAGTGCATTCTTAAATATCACGAGTTTTCAAGAAACGCCAAATTCAGATAAGAGTCAGAGCACAGCGTTTAAAAGGCACTGACAGCAGGAGGCACGACACCAGTTGGTCCCATTTTGCCAATAAAGCGTTAACATCAGCCGTCTTCTCTCCCCTCCCACAACCTATTTAAACAAACATCTGCCCTTATCTCGAGTCTTTAGGAAGCCCGTTGCTCAAAGTCGCGAATAACTGGCGCATCAGCTGAACAGACGCGATGGCTTTGGCAGACCCCGAGTGTGGACTATCAAACGGCGCGGGTTCCGCCTCTCCGTTTTCTGATATTATTGAACTAAATGTGGGAGGACAGGTGTATGTGACACGGCACACGACTTTAATAGCCGTGCCGGATTCTCTCCTGTGGAACATGTTTAGTAAGAAGACGCCGACAGAGCTGGCACGGGACAGCAAAGGGCGCTTCTTTCTGGACAGGGACGGTTTTCTTTTCCGCTACATTTTAGACTACCTGCGGGATCTAAATCTGGTTTTGCCTGACTATTTTCCGGAGAAGAGCAGATTACAGCGGGAGGCTGAGTTTTTCCAGCTGCGGGACCTGTCTAAGCTCCTGAGTCCCAAAATGAGTAAAGACAACTCCATCACCGACGAGATCTGCCCGAGTGACTCGGAGGAGCCGAGCGCGCCTCCGCTGGTGGGACCCGACGCCTCGCGCACGATGTCCGTCGCCAGCACCGCTCACTCTCCTTCCCTCGAATCCAAAAAGTCGGGCTACATCACAGTCGGTTACCGGGGATCGTACACGATCGGAAGAGACATACAAACGGACGCCAAATTCAGGCGGGTCGCGAGAATCACGGTGTGCGGGAAGACCTCTCTGGCTAAGGAGGTTTTCGGAGACACTTTGAACGAGAGCAGAGACCCGGACCGCCCTCCGGAGAGGTACACATCGCGCTATTATCTGAAGTACAATTTTCTCGAGCAGGCTTTTGACAAACTGTCGGAGTTTGGCTTCCATATGGTCGCGTGCAGCTCCACGGGCACGTGCGCTTACTCCAGCAACGACCCAAACGAGGACAAAATCTGGACGAGCTACACAGAGTACGTTTTCTGTCGAGAATGAGCCAAAGGTGTCGCGtttaattgtgtatatataggcATTCCGCTACGAGAGCAAAGTTTCATCCGTTTAGGAGAGGTGGAGTTTCTAGTTGTGTTTATCAAAGGTTTTGTCTGTTTACACCGAGACTCAAATAGCCTACTACATGTAGAATTAACAAACGCAGACTAACTAGCTATCATTGCACTTCATAGCTTCATTTTGTTCGCAGAAAAAGTCAGATTCATATTTGAGGGCCTGTTTGTAAAACGTCCTTGATGTGTTTTGTACTTTGCATGTATTATAAATGGacacatgaaatatttttaaatgatttaatgtacAAGTTTGAAGAAAAGTTGGTTACTGACTCATTAGTTAACATTCTAGAAAGATTTGGAAATTCGTCTTCATTTGTGCTTTCCTTTAAGTTCATATTAAACTTTTCACTGTGAATAACCCACTAAAACTGAAGTTTCATTGCTGCCTTAATTTCTTTAGTAAAATTAAAGCGGTGCCAAAGTTACCTGCAGTGATTCATTGCACTTTTTGACCACTTTCAATTTCATTACAGATTAAGAAAATTGAGtaaaaactcttaaaactcaaaataaagtaaaaaaaaaaataataatacaactttgtaatatattacaaagATATTACAATTTTGTGAGGCTTACCTTTTTACAGCAAACAACTgtattgtattgatttttttagcacattttttgttttgtgcgaagaattaatattttttgttttgtcttaggTTTACCGTTTCGATGTCTATATTACAACGAACATCTCTCTTTTGTTCCAGCATTGTAAGCATCTCATTTGTAAGCATCTTTGCTGTTTAAAAGCTGATCATTCAATAAATTGTAATCTGTCATAA

Function

GO:

id name namespace
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process
GO:0021986 habenula development biological_process

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104049 lncRNA downstream 28241 14244287 ~ 14247328 (-) True G70332
XR_006251857.1 lncRNA downstream 86568 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 350733 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 351465 13923749 ~ 13924104 (-) True G70308
TU103893 lncRNA downstream 380109 13891346 ~ 13895460 (-) False rif1
TU104075 lncRNA upstream 85373 14363039 ~ 14372674 (-) False LOC122351495
TU104117 lncRNA upstream 199666 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 312192 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 316597 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA upstream 316758 14594424 ~ 14595342 (-) False G70396
XM_043248145.1 mRNA downstream 62634 14208147 ~ 14212935 (-) True sgo2
XM_043248146.1 mRNA downstream 67263 14204332 ~ 14208306 (-) True LOC122351222
XM_043248463.1 mRNA downstream 68218 14205767 ~ 14207351 (-) True LOC122351400
XM_043248147.1 mRNA downstream 70337 14204332 ~ 14205232 (-) False LOC122351222
XM_043249210.1 mRNA downstream 72081 14202785 ~ 14203488 (-) True crygm7
XM_043249609.1 mRNA upstream 5936 14283602 ~ 14285530 (-) True zgc:162944
XM_043249471.1 mRNA upstream 9621 14287287 ~ 14290228 (-) True txndc9
XM_043249542.1 mRNA upstream 13183 14290849 ~ 14306284 (-) False rev1
XM_043249541.1 mRNA upstream 13183 14290849 ~ 14306284 (-) True rev1
XM_043249474.1 mRNA upstream 61032 14338698 ~ 14340623 (-) True sox1a
TU104031 other downstream 21793 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 335701 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 462242 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 779924 13473140 ~ 13495645 (-) False gypc
TU103526 other downstream 779924 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 1025437 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1112183 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1493755 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2539474 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2539474 16817140 ~ 16823775 (-) True G70986

Expression Profile