RNA id: XM_043248300.1


Basic Information

Item Value
RNA id XM_043248300.1
length 2063
RNA type mRNA
GC content 0.46
exon number 2
gene id hoxd9a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4398723 ~ 4401072 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGTCTTTTTATTAAGGGAACATTAATACATAATCAAATGCACCTCGTAAAAATTTTATTGATACACATAAAATCGCATAACCGGCTTTTCAACGAGCaccaaaaatatacacaaatatgacTTCCCGCGTCAATCTCACAACACCTCGCGGACTCAGATCTTCACACGAGAGCGGCGAGGCGCGTTTATAAAAGACGAGAACGCGCGAGGCTGCGGTGCTTCGCCCTTTTACAGcatgttattacatttattttacgaGGACTTGCAACTCGGTACTCTATAAAATACTTTACAAGGCTGGAGTATGACATACCTTATGACGAAATTTTGCAAGATTTGACGCCGCCGGAATCGTTCGCTAAGCTATCGACGGCGAGGGCTGAAATAAACGGGTGCATTTATACgaccttgttaaaaaaaaaaaaacagcagcggTCTGAAACCGGAAAACCGCTATAGTTAAGATGAAactaatttcttattttttcatcAAACGTACCGTTATCAGCGGACTGATTTACTCTCTGTATTAGTAAATATGATCACGTGATTCATGTAACCAATCACCGGGGATGAAGGCAGCAAAAATACTATGATTGTTCAGAGGCAAGGTTTCTGAAACACAGTAAGGTTTTATATGAGTTCGAAGGGATCCAAAAATGTCGACTAGTTCAGCTCTGAGCAGCTATTATGTGGACTCTATTATGGGGCACGACACGGAGGACGTGTACGGAGCGCGTTATATCCAGGCGAGGCCGTCAGGTGTGGCGGAAAACGCGGACTTCTCGTCGTGCAGCTTCGCTCCCAAGTCAGCCGTGTTCCCTGCGTCCTGGAGCTCGGTTGGTCAGCCGTCCAGCGCCGCCGTGTCCGGGCTTTACCACCCGTACGTCCACCAGAGCCATCTTTCAGACAACAGATACGTGCGCTCCTGGATAGAGCCGGTCTCGAACCACATCTCTCTCTCGGGCTTCCACTCCGGCAGTCGGCACGGCGCTGCAAAGAGCGAGGGCTCCCCCTCGAAAAGGACCGAAAGCGCGGCGTTTGAGCCGGAGACGCCGGTGGCTCCCGAGTTCAGCTGCGGCGCCGCATCCGAAAGCGCGGACAAAGCTCCCGAGGAAACGGTCGCGAATGATGTTTCGAGTCACGGTGAAGCTAAAGacgaaaaacaacaacaacaacttgaCCCAAGCAATCCTGCGGCAAACTGGATCCACGCGAGATCAACGAGAAAGAAACGCTGCCCTTACACAAAATATCAGACTCTGGAATTAGAAAAGGAGTTCCTTTACAACATGTACTTAACGCGGGACCGACGGTATGAAGTCGCACGAATCCTGAATTTAACAGAGCGCCAGGTGAAAATCTGGTTTCAGAACAGAAGGATGAAAATGAAGAAGATGAACCGAGAGAGGGGCAGCAAAGACCCCTAGCTCGCGCGCGCTCGCTTTAGGATGcgtttttatttgcttgttcaGATATCATATCTTCTGTTTATACGGTTATTATTTGACTAGCTTGAACTAAATGAGTATCCCTCGATAAATTAGGCTCAGAACGCACCGTGGCGGACCAGTTCACTCAATTCTGATCCTTTCTCATCAGAACCCTAGTCTTATAGGACCTTAGGGTACGGTTCTGATCTTTAAATCAGTCAACATTGCATGCGAAACCTTATCTTTCCAAATgtacttttcttttaaactggGCATCGTGTACAACTGGTGACTTTTTCAGTCTGTCTGgtttcctgttttatttttcacggTGAGGCTCGTCTTCAGTGCTGTATAGTGAATTTGGGTGTACCTTGTACACTTTGTTAAATGCTCCACCCGTGCACCTACtgtgaaaaatgcttttttttagaccgttttacaaataaatggcaaTTTCGACTGAACGCTGTTGTATGCACGGaccgttttttttaataacagcaaTGCAGTGTGATCTTATGTTTCTGTGACCAGCGACAATACTGATTTTGTTTCATGCGGAATACTTTTTTGGTCAGGCGATATTGCTATAAAAAAGGTGTCGCGAAGGACCCCAATTTATCGTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09300 ABDB; homeobox protein abdominal-B and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100104 lncRNA upstream 41910 4355005 ~ 4356813 (+) True G67684
TU100017 lncRNA upstream 176552 4219975 ~ 4222171 (+) False G67630
TU100015 lncRNA upstream 179213 4217050 ~ 4219510 (+) False G67630
TU100051 lncRNA upstream 190182 4207690 ~ 4208541 (+) True G67657
TU100030 lncRNA upstream 233651 4162356 ~ 4165072 (+) True G67641
TU100146 lncRNA downstream 122214 4523286 ~ 4559028 (+) False G67717
XR_006251713.1 lncRNA downstream 171502 4572574 ~ 4575436 (+) True LOC122351246
TU100155 lncRNA downstream 171604 4572676 ~ 4575430 (+) False LOC122351246
TU100157 lncRNA downstream 171604 4572676 ~ 4575525 (+) False LOC122351246
TU100192 lncRNA downstream 276378 4677450 ~ 4685181 (+) True G67752
XM_043248345.1 mRNA upstream 1145 4394716 ~ 4397578 (+) True hoxd10a
XM_043248258.1 mRNA upstream 6712 4389648 ~ 4392011 (+) True hoxd11a
XM_043248255.1 mRNA upstream 11720 4385439 ~ 4387003 (+) True hoxd12a
XM_043248257.1 mRNA upstream 15838 4381524 ~ 4382885 (+) True hoxd13a
XM_043249289.1 mRNA upstream 271710 4120530 ~ 4127013 (+) True scrn3
XM_043249717.1 mRNA downstream 8823 4409895 ~ 4413160 (+) True hoxd4a
XM_043249716.1 mRNA downstream 16216 4417288 ~ 4423340 (+) True hoxd3a
XM_043249762.1 mRNA downstream 146429 4547501 ~ 4555749 (+) True hnrnpa3
XM_043249761.1 mRNA downstream 146429 4547501 ~ 4553177 (+) False hnrnpa3
XM_043249604.1 mRNA downstream 175110 4576182 ~ 4610978 (+) True agps
TU100018 other upstream 176552 4141054 ~ 4222171 (+) True G67630
TU100016 other upstream 178328 4217050 ~ 4220395 (+) False G67630
XR_006251811.1 other upstream 273273 4120527 ~ 4125450 (+) False scrn3
TU99910 other upstream 415141 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 447412 3948036 ~ 3951311 (+) True G67566
TU100101 other downstream 9804 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 156071 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 307981 4709053 ~ 4717233 (+) True rbm45
TU100423 other downstream 614561 5015633 ~ 5018338 (+) True c9h2orf76
TU100453 other downstream 739141 5140213 ~ 5142152 (+) False ndufb3

Expression Profile