RNA id: XM_043248302.1


Basic Information

Item Value
RNA id XM_043248302.1
length 1807
RNA type mRNA
GC content 0.48
exon number 2
gene id olig2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15940890 ~ 15943090 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACAGCCCTCGTCATCCTCGGGCGTGCCAAACACAAACGGTGCACGGGTGAACTGGAATAACGAGTGAATTCTGCAAAGCCGCACACAAGCACGCGCTTGCACCTGCTACCGGAATATTGACATCTGCGAGAATCTGAGAGCGCACTGAACACCATGGACTCCGACACGAGCCGAGTGTCCAGTAGACCTTCTTCTCCCGAAGGCGACGATCTCTTCCTGTCTGCTGTCAAGAAATCCGTGGGTTTCTCCGGCGCCGTCTCCTCCACACAGAGCGATTCTCCTCCGGAGTTAAGAGGCGCGGACCTGCGGGGCGTCTCCAGCGCCGACGAGGACGCGATGTCTCTGAAGATGCTCTCCAAAAAGGACCGTAAACTCCTGTCCGAGTCCGAACTGCAGAACATGCGCCTCAAGATCAACAGCCGCGAAAGAAAACGCATGCACGACCTAAACATCGCCATGGACGGGCTCCGAGAGGTCATGCCCTATGCCCACGGGCCATCCGTGCGCAAGCTCTCCAAAATAGCAACCCTGCTGCTCGCGCGCAACTACATCCTTATGCTGAGCAACTCGCTGGAGGAGATGAAACGGCTCGTGAGCGAGATCTACGGAGGAGGGAGCGGGGCTCATCACACCGGCTTCCACCCGTCCGGTTGTGGCACCCTTACGCACGCGGCGGGCGCTCCGTTACCGGGTCACCCCGCCGCTGTCTCGCACTCGTCTCACCCGGTGCACCATCCTCTGCTTCCACCAGCAGTCTCCACCGCCGCTTCTCTCACCGGCCCGGGTCTCTCAGCCGTCAGGCCGCATCACGGACTGCTCAAGGCACCGTCAGCCGGCGCTGGCGCACTCGGCGCTGGCTTCCAGCATTGGGGCGCGGGGATCCCGTGTCCGTGCAGCATGTGCCAGGTTCCTCCGCCTCACGTGTCCGGTATGAGCACCGTCAGCATGCCACGACTGACTAGTGACTCAAAATGAAGCACTGAACTTTGATAAAAGAACTCTGAGGCGCAACCATagacttttatatattaaagctGTATTATCTCGTGTTTATCAGTTTATGGCTGAACAATTTGTTTTTGGAAAGCACAAATAGGTCTGAAGCGAAGGAAATGGATCAAAGCCACTAACATAGAGTTTTCTAACACTAGAGATATTAGGTTTACTATCCATGTGCATTTCTGTGTATGAAGTTTGTGAAAATGGCATACCTTACTCTCTTTAGCCTTCGAACGCTGGACTGCTATTTACTAAATAGGTATAATGCGAACCTTAGAAATTTATagcatacaattaaaaataaatgaaaacttacAATTCATGCTGCAGTTGAAGAGGGCTAAATAGTTTAATGAGCCATTAATATTAGACGTTATACATTAAAAGTCCTAGCTTTGGAAAAATGGGACTGCACTGTGTAAATATGTAGATTGCATTTGTACAGATATTGAGAGATTTTATATTACCTTCCCCAGTTTATGTTTGGGGTCAGAATTCATTTGCCAAGCGCTGTCTTTAACAGGAAAGATGCACCTGTTCGTTCCTGcactgtttttctctctgtgtctttatATCTTCCTCTTTCTCCCTTTAGTTTTCTGGCCttccatcttttatttttttttgtcttttctttctgcACAAGCATACCCGTCATGGCCGATGCGAAGAATgatcaacttttattttttataataaagtgtaaaatgatatttatttacttattttgatggtattttcaaattaatgtgCGGTGAATGTTTGAGTcctaactgtaaaataaatgttttaaaattgtgcattta

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0001764 neuron migration biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0007400 neuroblast fate determination biological_process
GO:0007403 glial cell fate determination biological_process
GO:0021742 abducens nucleus development biological_process
GO:0021754 facial nucleus development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104518 lncRNA downstream 178221 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 296614 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 302454 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 519313 15418999 ~ 15421577 (-) True G70581
TU104305 lncRNA downstream 665049 15269829 ~ 15275841 (-) True G70503
XR_006251840.1 lncRNA upstream 5023 15948113 ~ 15953976 (-) True LOC122352066
TU104861 lncRNA upstream 175192 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 662277 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 662277 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 667180 16610270 ~ 16610561 (-) True G70955
XM_043249362.1 mRNA downstream 8354 15930621 ~ 15932536 (-) True olig1
XM_043248041.1 mRNA downstream 27320 15909284 ~ 15913570 (-) True ercc1
XM_043248042.1 mRNA downstream 33323 15906028 ~ 15907567 (-) True LOC122351156
XM_043248043.1 mRNA downstream 36707 15902347 ~ 15904183 (-) True LOC122351158
XM_043249691.1 mRNA downstream 41738 15894122 ~ 15899152 (-) True dnajb11
XM_043248861.1 mRNA upstream 20704 15963794 ~ 15966467 (-) True gatd3
XM_043248860.1 mRNA upstream 23673 15966763 ~ 15973561 (-) True LOC122351640
XM_043249419.1 mRNA upstream 31475 15974565 ~ 15978301 (-) True hpxa
XM_043248590.1 mRNA upstream 55051 15998141 ~ 16006044 (-) True LOC122351503
XM_043248589.1 mRNA upstream 63090 16006180 ~ 16024933 (-) True fhip1b
TU104521 other downstream 169026 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 541453 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 634915 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1687114 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2001022 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 874050 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 874050 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1292782 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2626665 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3777408 19720498 ~ 19721737 (-) False ankar

Expression Profile