RNA id: XM_043248310.1


Basic Information

Item Value
RNA id XM_043248310.1
length 1970
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122351330
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 3906741 ~ 3910820 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAGCATCAAGCCTTTTCCAGGGGGGAGAAACCACAGAACAGGCTTCCGACCCAGAAGCGGGAGGTAGTTCTGGTGGTTGTGGAAGAATGTAGGGATTCGCCGGTCTCCATTCCAGTGCAGCTGTTACTTAGCCACGGCTGAAGGACCATCTCTGCCAGGAAACCCAGTGAAGAATTTTCTGGAACTTTGGACTTTGCCTTACGTTGGATAAACTACACCAAACAAAACTCGCAGCAAAGAGGGAACTGGAACACAAAGAGCTGAATGACGGAAAGGGCATCCTGATGAGGAACAGCTGCGATCGTTGTTTCCCCTCTTTTTATTGTGAGCACACAGACACGTGTATGTGCTGTTGTGCAACTTGATTCAATTACAGATATcaaatggcattttaatatgGGTTTTTAGTTCTCGGTTTTCGTTATGCAACAGTCCACggatttttaaaaaggtctAATGTGATGCAGTAAGTAAGAGCTGGCTCACACTGACCACACAGAGTAAAGAGATTGGCATGAGTTGGGTTATTATCAGCTTTGGACAACATGCATCGTCTGCTTTGGAGAACAAATGTTGACTTATTCTTCTGTCTGCTTTTGATTCATCTCAAATGCAACAACATAATAGGTGGAGGTCTGAGGATTATTGACCACGATGAGTCAGTCAAAAAAGGAGGAAATATCACTTTGTTTTGTCGTCTGATTGAGACAGAGGAGGATTTAACTCGCATTGTCTGGCAGAAACAGACAAGAGAAAACCTTGAACAGGAAACATTCTTAATTGTTGAAAAAGATGGTAAAACTGAACACAAAAGTGATTTACTGGACAAGGTCAAATTTATTGGGaatattaaagagaaaaatggaTCGGTTCAGCTGCTGGGAATGACACTGCTCGATGATGGGGTGTATACTTGTATCTTCATATTTCCTAGtggacaaaaacagacaaacatcaATGTCACCGTGCATGTTCCTCCGGTGGTGAACGTTGTCGGGAAGACGCATGTTTCAGGTCACGTCGACATTGTTTTGGCATCATGCGTTGCTTCCAACGGCAGGCctgcagcagaagtgttttggaGATTAGGATCCGAGAGTCATTTGGGAAGGACAGAAACCAGCTACACCGAGCACACGGATGGGAGAGTCACGGTCGTGTCCCACGTACTCGGTGCTCCAACCAAAGATTTAAACCAGAAGAAGATCAAGTGTGTGGTAAACCACAGCACACTGACGAAGGAGCTAGAGTTGGACTACATAATAAACGTCCACTATCCTCCAGAATTGGTGGTGATCTCTCCTGAGGATCCAGCACAGACTCAAGAATATCTTTGTTCGGTGGATTGTAACCCAACACCAACCAGCTACACGTGGACCAGATTGAACGGAAGTACTCCTCGTTTTGAAGGAAACAAGCTTTTCATCCCAAAATCGTCTTCTGGTTTTAATGGTGTATACATCTGTACAGCATCAAACCAGTATGGAAGTGCTTCAGGGGTCCTTTATGTGAATAACACCGGATCCACTGCTGACTGTTGGCTTCTTCTCGGCTCGGTCTTCAGCTGTGCCGTCCTGTGTATCCCTCTGCTTTACATATTTAGCGGgggtaaaaaaaagtaaaagtacagttaaagtaaacatttaatttcgTCCTGATTAGCTGATCATGTAGAAAAATGTGATTAGATTAAGACAATAGATTAAGTAAACAGGAAATCATGCAGGGTCATCAAACCATCTGTaggtgtcaccaagccagcagagggagccctgacctctgagtgatctgcattcactccctctgcgacaacttcctgtctgagaACTATAAAGTCAGTAGCAGGCCCCttacctgcaggttgcattgttcgcctggtcttttgttgttttcctagttccttgtgttttccgagttcttgtttccctggttttgatcctgcctgtctttggatactgtgattgtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99748 lncRNA upstream 76969 3828991 ~ 3829772 (+) False G67448
TU99751 lncRNA upstream 77124 3828823 ~ 3829617 (+) True G67448
XR_006251706.1 lncRNA upstream 260127 3642961 ~ 3646614 (+) True LOC122351161
TU99699 lncRNA upstream 268659 3601318 ~ 3638082 (+) False G67418
TU99905 lncRNA downstream 35714 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA downstream 73349 3984169 ~ 3985934 (+) False cdca7a
TU99977 lncRNA downstream 127776 4038596 ~ 4038822 (+) True G67604
TU99979 lncRNA downstream 153817 4064637 ~ 4064961 (+) True G67606
TU100026 lncRNA downstream 245836 4156656 ~ 4157963 (+) True G67637
XM_043248107.1 mRNA upstream 139204 3760833 ~ 3767537 (+) True stx19
XM_043248460.1 mRNA upstream 147526 3754816 ~ 3759215 (+) True rsph1
XM_043248457.1 mRNA upstream 154118 3744006 ~ 3752623 (+) True fbxl3a
XM_043248436.1 mRNA upstream 164002 3670562 ~ 3742739 (+) False mycbp2
XM_043249752.1 mRNA downstream 2818 3913638 ~ 3922552 (+) False LOC122352174
XM_043248084.1 mRNA downstream 15071 3925891 ~ 3945608 (+) True LOC122351193
XM_043248533.1 mRNA downstream 37198 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA downstream 37200 3948020 ~ 3981211 (+) True zak
XM_043248534.1 mRNA downstream 70526 3981346 ~ 3985962 (+) True cdca7a
TU99551 other upstream 710220 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2177346 1713813 ~ 1729395 (+) False bpifcl
TU98836 other upstream 2771752 1127526 ~ 1134989 (+) True G66795
TU98782 other upstream 3046585 858680 ~ 860156 (+) False LOC122351650
TU98754 other upstream 3101732 797133 ~ 805009 (+) True G66727
XR_006251861.1 other downstream 2818 3913638 ~ 3922878 (+) True LOC122352174
TU99912 other downstream 37216 3948036 ~ 3951311 (+) True G67566
TU99910 other downstream 70707 3981527 ~ 3983582 (+) False G67566
XR_006251811.1 other downstream 209707 4120527 ~ 4125450 (+) False scrn3
TU100018 other downstream 230234 4141054 ~ 4222171 (+) True G67630

Expression Profile