RNA id: XM_043248341.1


Basic Information

Item Value
RNA id XM_043248341.1
length 9956
RNA type mRNA
GC content 0.42
exon number 25
gene id obsl1b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19997475 ~ 20029805 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGGCTGCCAGTATTTTTAGGGGACAGCAGCAGCTGCAAAAGCATTTAATGGTCTTCTACGAACAATGACACTAGGGGTGTCTCAGGACTAAACGCCACAGAGATTGTGGGACTGCTGGAGCGATCAAAGGAAAGCTGTCTGTTAAGACTAAAATCATCTTAAAAGGGGCATGTAAAAGATTTGGCAAAATGGGCAGGTGACACTGGTTAACGAGGAGGACATATTCCCAAGAAATTTACAGAAGAGAAAAAGGATTATTCTTTTATAAACCCACTACCGCTGGAAGTGAAGGCCAAGTGAAGCAGGAGAAGCTGGTTGCCACGGAATGTATATTGACAGTTGTCTCTAAGGACTGAAGAGAGAGACTTGATAAACAGCCGGACAACAACATTCTTCCAAAGTAATATAGAGACTGAATGCCTGTAGCCTGTCAATCTGAGCGGAGGTTGGCAAGCGAGCAGGGATGGATGTGTTTGGTGGAGCGCCACGTTTCCTGGCCTACCCTCGTCCTGTGGTAGTACAAAGTGGCACAGATGCAGTTCTGAAATGCCAAATTGGGGGGGATCCCAGACCAGCAGTTATATGGGAGAGAAACAATGAGAAGATTCATCCAGAGGGCAGATATCGGGTGTTTGAGGATGGCAATGTCTATAACCTTATCATAACCTCTGTGACAATGGAGGACAGTGGGCAATACATCTGCAAGGCCAAGAACTGCATTGGAGAGACTTACGCAGCAGCCACTTTGAAAGTAGAAGGTGAAGCACAGGAGATGGAATTTCGGGAGGAAAACAAGCCCCGCTTCCTCATCAAGCCCCTCTCGACTAGAGTTGGACGAGGAGAAGATGCTGTGTTCTCCTGTAAGCTATGGGGAAATCCTAGACCAGAAGTGATGTGGGAGAAGGATGGCAAAAAGTTAAATGAGATCTTTGAAAGCACACATTTCGCCATCAGCTATCAAGATGGAGGATGGTTCCAACTAAAGATTTTCAAGACAAGAGCACCAGATGGAGGGGTGTACACATGCAAGGCCAGGAATGAATCTGGAGAAAGTCTGGCGGGGGCTGTGCTATTGGTGGATGCTGGACCAGGACATGAAGATGAAGGGAACCGTAATGGATACACTAATGGCCACTGGAAAGCACATCAGGGAAAACAGAGAAGTGGCAGGCAGGTTGCGACTAGGCTGAAAGATGACCCACTGCCAAACTCAGCCAAAGTGAAAATGTTTGCAGTGACGGAAGGGAAACATGCAAAATTCCGGTGCTATGTAACAGGGAAGCCAAAACCAGAAATATTATGGAGGAAAGATGGGAGACTTATCTTGTCTGGGAGACGGTATCTTTTGTATGAAGACAGAGAGGGTTACTTCACACTTAAAGTTCTCTACTGCAAACAACAGGACAATGGAGTTTATGTCTGTTCTGCTTCAAACACTGCAGGGCAAACCTTGAGTGCTGTACACCTTATCGTCAAAGAGCCACCTGTCCGATTTAAGCAACCACTGAATGACTTGCAAGTATGGGAGAGGGACTTGGCTGTTCTTGAGTGTGAAGTTCCTGAGGACTCTGTTCCAATCACATGGTACTTAGAAGACAGACGACTACAGCCTGGAGCCAAATATGGGATGGAGGAGTGGGGTACAAAACGCAGACTTACAATCCGTGATATTGGAGTTGATGACGATGGGATATATCTCTGTGAGATGGCTGATGGGGGCAGAAGCATTGCAGAGGTAGCAgtcaaagGTACCATTGTAAGAAAACTGCCACGAAAAGTTGACGTTCTAGAGGGGGAAAATGCAGCCTTCTGTGTGGAAGTGGAGGAGGAAGAAATGGACATTCATTGGTACAAAGATGGAACAGAACTACGGGAGACCCATCAGACCATTCTCAAATCCTTTGGAAGGACACACATCTTGGTTTTTGTCAACACCACACCACAAGACTCTGGTATGGTCATGTTTTATGTGGGTAGATCAAAGACGTCGTCACAGCTACGGGTGAAAGCTGCAAGGCACTGTCCACCAAGCTGTCCTATCGGGgtacaaataaacacagaacgAGCAAATGCAGCTCTCCTTTCCTGGTTTCCAGCACAAGACTCTCGGAAGAATCCACCTTCAGGGTATATAATTGAGAGGCAAGAGGTTGGCTCACAAGAGTGGCTGCAATGTTTGACCACAGACTCTGCGACCTCAGTGGAGATTCTTGGTGACAGCGTTCCATGCGAGGCAGACTACAGATTTCGGATATGCAGTGTCAACAAATATGGAAGAAGTGGGAATGTAGAGTTTCCTCGAGCAGTTCACCTTGTTCCAGTTGCCAGAATCCAAGCACCTCTACAAGATGCTTTAGTGCCAGAGGGTCAGGATGCCTGCTTTACCATTGAGCTGTCTGCCTCAGTTATAGGCACTTGGTTCTTAAATGGAAATCAGCTTCAAGACGATGACCGTTTCTCCATAAGGCGTTCACGAACACACCAGTCTCTACGCATTCGTGGGGTACGGGACACAGACAATGGAGCAGAGATCACCTTCATTGCCTATGGAATTCGAGATTCTGCTGCTTTGTATATACAAGCTCCACTGGTAAAATTCACTCCACTTTCTGAAATGGATCGAAACAAATTTGTGGAGGTCGGTAACCCTATAGTGCTCTACTGTGAGCTGTCAGACCCCGAGGCACCGGTTCGTTGGTATAAGAACGGTGTTGAACTTCAATCAATGGAAGGTCTGCACATCCAGTCAGAGGGAACAATGAGGAGAATTGTCATCCAATCAGCTGATTTCTCCCACTCAGGAGTTTACAGTTGTGATGCTATTGATGACGTCATCAGGTTTAACGTGGAGGTTGAGGCACCTCCTGTGACATTTGCCTACATACCAGAAGATGATCTGCACAGAAATATTGTGGAACAAGACAATCTACTCCTTTGCTGCCAATTGTCGAGGTCAGATGCTACTGCACAATGGTACAAGGATGGAGTAGAGCTAAAGTCTAGTGACAATGTCCTCATAGAGGCAGAAAACACTATACGAAGACTGATCGTCCTTTCAGCTCAACTATCAGATTCTGGGACGTACACCTGTCGTGCCGGAGATAGtgcattagcatttaaagttaACGTAAGAGAACCTCCAGTAATGATTGTATATCCAAAGGAAGATGTCCACCTTGATCGCTACGTTCCTGAAGAAATTGTCCTCAGTTGtgaactttcacggccaaatgGAAAGGTCACATGGTTTAAGGATGGACAGAAACTACAGGAGAGTGAAAACATAAAGCTAAAGTCAGAAGGTCCATACAGACGACTAAAAATTCTCCACAGTGGAGTTGAAGACTCTGGAGAATATGTCTGTGACACAGCTGATGATTCAATATTCTTCCATATAAACATTAAAGAACCACCGGTGCGCATAGTTTCTCCAAGTCAGTCCCAAATGGAACTTTGCCAACAGACATCTGAGAGGATGGTCCTGAGCTGTGAAATCTCCAGACCAAATGCTGCTGTACGGTGGTATCGAGATGGACTTGAGGTGGAAGAGAGTGACAGCCTAATTCTGGAGGTTGATGGTGTCTACAGGAGACTTATTATCCCCAAACCCACTGTCAAAGACTCGGCAGAATATGTCTGTGACACTGCTGATGACTCTGTGACCTTCTTTGTCAACATTGCAGAGCCACCAGTTAGATTTATTCGGCCAAGGAAAATGGCCTATGGAGTAGAGAAACTTGTTGGAGATATTGTGGTTCTTGAGTGTGAAGTATCTCGACCAAATGCTGAAGTTAGTTGGAAGAAGGATGCAGAAGAGATTGAAGAGAACAGCAACTTAACTATCACAGAGGATGGCACAAGTCGACAATTAACCATTCACTCTGCAGCTTTTGAAGACGCGGGGCAATATGTATGTGATGCTAGAGATGACGTGATGGATTTCTTAGTGAAAATCAAAGATCCACCACTAATAATTCTACGGAAATCTGACATAGAAACAAAACGCAGATTTCTAGCATCTGATGCCATAGTGTTAAAATGTGAAATCTCAAGACCAAATGGGGTGGTCAGTTGGCTTAGAGACAATGAGAAGATTGAGGAAAATGAGCATTTCATCTGTGAAGAGGAAGGCACATTTAGATCCCTGATTGTCCTGAGCGCTGAGTTGAAGGACTCAGGGGAGTACATATGTGATGCACAAGATGATAAAGTTGTCTTCAGTGTTACTGTAGAAGAGGCTCCAGTGTCCATTGTTGGAAATTCAGAGAAGCCAGAACACCAAATTTTAATGACAGGAGATGAGCTAATCCTGGAATATGAGGTATCTCGGGTAAATGCTATAGTCCAGTGGTACTTTAATGGACATTTACTACAAGAAgattcacgcacacacattgaAAGCAGAGACACAACAAGGAAGCTTGTGATATCAAGACTTCAGACATCTGACTCTGGAGAGTATATCTGTGATGCCATTGATGACAAAAAGATAAGCGGACTAACAGTTCAAGaacCACCGTTCACATTCAtcaaaaaagatgaaagaacaAATATTTCAGCCTATGAAGAAGACAGTCTGACACTACGTGCCACTGTTAACAGGGTCAATGCCCCAGTTAAATGGCAGAGGGGCCATGATCCAGTCAGAGGTGATCGTTTCCACACAACAAGTGATGGTAACACCCACTACCTCACTATTAACCCACTTAAGAAAAGTGATATTGGAGAATACATGTGTCATGTGGGATCTGACGAGATGCATTTCAGTATCAACGTTAAAGCAATGAAGGTGAAGTTCTCCAAACCACTAGAAAACACAGCGGGACTCAAAGGTAGTGATgtggttttaaaatgtgaacTGTACAAATCAAAAGGAGATGTTCAGTGGCTTAAGGGCAGCCAAGAGATTGCACCAAATAGACATTTTACAATCAGAGCTGAGGGTCGAGTGCGAAGCCTGACAATACACAATGTCACAGAAGATGATGCAGGAGAATATGCTTGTGAATCTAAAGATGAAAGGACATCAGCAACTGTAGTGGTCAACATCCCTCGCATTGTGGAGTTTATTGCAGAGATACACAACATAACTGTCATGGAAGGAGAAGACGCAACATTTAAGTGTGTGGTATCTCCAGAGGATGCAAAGTTGGTCTGGTTTAAGAATGGCCTGCCAATTTCATCAAATGAGAAGTTCAACATCTCAAGTAATGGATTATGCCATATGCTGCATATCAACAACTGCCAAGTCTTGGATAGCTGCAAGTTGACAGCCGAGGCTGAAGGTGTGATTTCCAGAGCAATCCTACAGGTCCAAGAGGCACAGGTGCTTTTCACAAAGATCATGGACACAGTGGTTGCAGAGGAGTTTGGTGAGGCAACACTTGAGGTGGAGGTCAGCCTTGAGACTGCCGAGGTGCAGTGGATGAGACAAGGAGTGGTTATACATCCAGGGTCCAAGTTCACCCTGAAGCAGAATGGCCCAAAACATTCTCTCACaatccacaaactcaccctttCAGACCGAGGCACCTACAGCTGTGAAACCCTTCATGACCGCACACAAGCCAAGCTCACTGTGGAACCAAGAAAAATCAAGATTCGGAAAGGTCTAACGGAGATCCAGACTTACGAACGAGAGACGGCTTCTTTTGAGGTGGAGCTGTCACATGGCAATGTGGATGGTGTGTGGCAGAAGGATGGGCACATTCTCAAAAACAACAACCGATTGCGTATGACTGCAAAAGGACGAGTACACAGCCTAACCATCTCCAACCTAACCTTGGATGACACTGGCACCTACATATTCTCTGTAGAGAACGTCAGATCACTAGCAAGATTGGAAGTTAAAGAAATTCCAGTATCAATTCTAAAAAAGCTTGAGGATATCAGGCAACCAGAAGGATCTGGTGTAACCCTCGAATGCGAGCTGTCGCGCCACAATGTGGACGTCAAGTGGACAAAGAATGAAGTTCAGCTTAAACCAGGAAAAAGTCATCGCATTTACTCAATGGGAAGAAAATGCTTTCTACAGATACTGAAGTGTGAACTGGGAGACTCCGGTTCATATGTGTGTGATGCTGGGGATGCCACAACATCCTGTTCTGTGGATATCTATGAGAGGGAATTTGAGATAATACAAAGTTTGGAGGATCTGGATATTCAAGAAGGTCAGAATGCAGTGTTCATGTGTGAAGTGTCCCTGGATGATGTGCCTGGAGAGTGGTTTAAGAATGGCGAAAAGATAAAACCAACCAGCACCATCAAGATTCGTCAAGAAGGGATAAAGCACTTCCTCCTAATTTGCAATGTTAAAGAAGACGATTCCGGGGAAATCAAGTTTGTTGCCAAGAATGTGGAGACTACAGCTTACCTTGAGGTGGAAGCACTACCAGCAAACATTGTGAAGCCACTTCAGGACAAGACTGCTCTGGAAAAAACCCGCGTCATACTGGACTGCACTGTGACCAATCCGCGTTGCAGCATTCGCTGGTATAAGGGACCGAATGTCATCCTGCCCTCAGAGCGCTTTGAGATCTGCAGTGAAGGGTGCTATCGAAAACTTGTGATTCAGCAGGTGTTGCTAGAAGATGAGGGCACTTACAGCGTCCAAGTTGGAAACTACACATCTTCGGCAAAGCTAACTGTTGAAGCTCAGTCAATCCTAATGGTGAGAGAGCTGCAGGATACGGATGTGACAGCTTCTGCAGACGCATGCTTTGAATGTGAAGTCTCTTTGCCCGTGGCCAAGGCACCTACCTGGACCCTGAATGGGGAGACGCTGCATCCCGGTCCTAAAGTTGTGGTGGAGAAAATGGGAACCATTCACAGGCTCACTCTCAAACAAACATCCGAAGACATGAGCGGCACTGTGTGCTTTATCACAGGGAGAGTCAAAAGCACTGCTCATTTGCAAGTCATAAGTAACCACTGAGAAACAGCACATAAGCACTTGTGATAATACTCAACTACGCcactatttaaatacaaaaaataccaaatgaaatgataaaactaTTAACCGTTTTAATGTGTCTGAAAAAGATAGGTctatcattaatttatttaaaaaaaaacaacaaaatatttaaatcttcATTATGCTGTTTTACACATTATATGCTTCTCTACACGGTTCGCCATTCATTATAGAATCATTTTTAAGCTTTTCCAAATTTATGATCAAACGCATTGCGCTTTACAAAATTAGCACACGATGTAATTCAGCTATGTTGTTACGGCTTAAAATTTCTTGCACAGTAATTTggtatttcattttgaaatttgtGTACTACTGTATATCCTTGTATAGATAtccttttgtgttgtttttttaattcttgtttTGTGGGATGCGGATGAAAGTGAGGTTaaggtgaaataaaaatgtgcaggGCCAAAGACGATCAAAAGAGGGTTTGGGACGGAAAGTAACTTCAGCATATATAACACATACACTGAATTCAAGAACACAGACGTTTTACAAAGTAGGGaaacatttactaataaatgaaaatggtttTGATAGTTTTGTTTGCTTCTGTTGTAATCAGAAGGTATGTCACATTTCTTGCCTTTTACTGAAGTATATGAATAAAGTGCTGCAATTTTCCCTTGTTAAGCAATATCTTtcaataaattttaaaaactaaatttcttGTGGAGTgtgctattttctattttatagtGAACAGTCAATACTGTACTGGCGCAATGTTCCAAAATATTGGTTTTTCTCTACGGAAAAAAAGTGCAGTCTTCATTAACGTGATGTTCCAAACCGATAGGCTTGTGACTTtcttttcttatatatatatacacacacaaacatatactgTACGCGATGACACCGGAAGCCAGACCCATATTTACAAATGTCTAAAAGACCCTTTTAGAAACACATAAGCTATCAAACATATTTGCATCAAAAAAGCActgtaaagttaaaaaaaaaaatgtaatatgtaactTTTGGTAATGTTTGAAGTACTAGTGTACTCTTATGTCAATACCACCTTATCCAAAACAGCAACCAATTAGTTTCGATggctcttatttatttttaagtgatatAATACATTTCCACACCATGTCTGTTTAAATCTATCTGGTTGAAGATCATTTACATAGGCCATTTCATCTCGTTATTGTAATAAAGTTTTCTTTATGTAACGCTAGAGGGAGCCATAAGCGTTCTAATAAATTTAAGAATCGGCGCAGCCTAAGTTTTCAGGCAGCAAGTTTTTTAATTCCAggctttatttttcttaataatgCCCCGAGTACCTATACCAAGAGTTTCTGTTGAGCACATCAAAATCGGCTATGATAACGGACTTGCTCATTGCAGATACTACACAAGTGAAACAATTCACAAAGCTACAAGCACCGAAGCCTTACCCACTACGGCATTTTTGTTTCGGAGAACAAAATATCATTACACGTTTGTTATTCAACAATTATAAGAGAAATGCATTCGTGGCCCTGTGAGAATATTGAAAAGGCGGCATATTATTCAAAACAAGCGCTACCAAGACTATTACATAACCTCTGGAAAACACGGGCCTGGGTTGGTCCTGTTGCATAAGCAGACTAGTGTGAGAAGTCCTACTGAGATTGATGAATAGTCGGACCTTGGAGAATGTACTAAGTCAGACATGCGATTCAGTAACATGTTCTCCACTGCAAGACTCGATGTACTCGCGTACCTATTAAATTTAGGCTCGAGTTCACTgatgttttaacatttcttaaatgCTGTTGCTTTTACGTAACATTTTCAATGACTgacattatgtgttttttttttcatttcttcacaaaatgtttacgttttttttctttggttttaaaaaggtaaaaactcTTCATTTATGTTCACGCATTTTGTCAAAGACAACCCCATTAACGTCTACACAAATCCACAACACAGAGGGTTTGATTCAAGTACGACAAAAATCagttgcgtttaaaaaaaaaaacaaaaaaaaaaaaaaacaaataacactcAAGCTGCTCTTTAAACTTTTATGAataacaaaatctttttttctccatggcACAGCACTATTTTCATTAATATCACAAATATAGAGATGGCAAATGTTTCGCCATCAccaaatctatttaaaaagtcaaacactgaaaaatggacaaaaacaacACCGGTATTAAAAACCATAACATCATCTTTCCGCTCTCTCCCGGACACATGAACATCACCGTTATGTCTCGAAACATCAATATTGGCACTTGCAAAACAATCAACTCAGATAGTGCCGAGCAAGCATACGATCCCCATTAAGGAAAAGCATCCATATTAAATGGCAACTAACAAGAAGGCACGTCAACTGCACATTAACAGGGGCTCTCCAGTCCACAGTAcggtatgcaaaaaaaatcactttctcAATGAACCATCTGAAAGCTTAGTGATCTAATGGAGAGTTAAGGCATTACAAGTTGAACATCTGCTTCCACTGACAAATCAAGATTCGATTCCAGTATTCTTTACTCGTtttgattaatataataataaacacacaaatggcATACTGTTATGAATTTAAAACTATACAGTATCAGACAAACTGATTTTGTAAATAAGACCACTTTGATATTGTCTGACGACGTTTTGCTACAGTAATTTTAAGGCCGTGGCGAATGACCTCACATTAGACAAAATAAAGCATACTGTATATGATTTAAAAGGTGCATTAGCTTAACCTTCAGAGTGAAAACGGGCCGTGTGACACAACAAGTGCCCGACCAATTTCCCTTTCTTACATCTGTTCCTTTGTGAAACTTGAATTTCAAGTGCTGGCTGATTGCATCATGAGCCTTTCTGATCTGATTTAGAATTtggaggaagaaaagaaaaaaaaaaaaacaaaataaatggataatgAATGCTTGTTTTAGGAGTTCAATAAAGCTGGCTAGATGAAAAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106184 lncRNA downstream 55928 19887175 ~ 19941547 (-) True G71727
TU106191 lncRNA downstream 74784 19916199 ~ 19922691 (-) True G71732
TU106145 lncRNA downstream 144888 19848339 ~ 19852587 (-) False nab1b
TU106138 lncRNA downstream 187352 19807866 ~ 19810123 (-) False glsb
TU106132 lncRNA downstream 190388 19800407 ~ 19807087 (-) False glsb
TU106551 lncRNA upstream 133347 20163123 ~ 20168604 (-) True G71912
TU106568 lncRNA upstream 185644 20215420 ~ 20218047 (-) True G71919
TU106549 lncRNA upstream 241282 20271058 ~ 20602822 (-) False G71912
XR_006251770.1 lncRNA upstream 267154 20296930 ~ 20302428 (-) True LOC122351563
TU106560 lncRNA upstream 267423 20297199 ~ 20302436 (-) False LOC122351563
XM_043248790.1 mRNA downstream 104160 19881814 ~ 19893315 (-) True mfsd6b
XM_043248788.1 mRNA downstream 104161 19881550 ~ 19893314 (-) False mfsd6b
XM_043248791.1 mRNA downstream 104161 19881823 ~ 19893314 (-) False mfsd6b
XM_043248999.1 mRNA downstream 144850 19833920 ~ 19852625 (-) True nab1b
XM_043248998.1 mRNA downstream 168000 19796252 ~ 19829475 (-) False glsb
XM_043249235.1 mRNA upstream 219212 20248988 ~ 20270532 (-) True calcrla
XM_043248701.1 mRNA upstream 241444 20271220 ~ 20295378 (-) False tfpia
XM_043248699.1 mRNA upstream 241444 20271220 ~ 20295378 (-) True tfpia
XM_043248700.1 mRNA upstream 241444 20271220 ~ 20295376 (-) False tfpia
XM_043248702.1 mRNA upstream 243017 20272793 ~ 20295378 (-) False tfpia
XR_006251780.1 other downstream 104160 19881824 ~ 19893315 (-) False mfsd6b
TU106134 other downstream 192876 19796257 ~ 19804599 (-) False glsb
TU106113 other downstream 275738 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1427593 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2741984 17235872 ~ 17255491 (-) True G71118
TU106614 other upstream 459388 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 459388 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1679512 21709288 ~ 21726820 (-) True G72363
XR_006251764.1 other upstream 2141687 22171463 ~ 22223667 (-) False cerkl
TU107316 other upstream 2269396 22299172 ~ 22307013 (-) False LOC122351746

Expression Profile