RNA id: XM_043248347.1


Basic Information

Item Value
RNA id XM_043248347.1
length 5182
RNA type mRNA
GC content 0.46
exon number 10
gene id cracdla
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7200270 ~ 7214956 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtatatatacatatataaaactatgcataactaaatttaaaatgcatagaataaagaaaaaaaaactcctcaATCCATAGTTATACTGTAATAGAGAGTATGTCAAGTATGTATAGAATACATtaaagtatatgtatatgaatcATTAAAGTTTAGAACCAAAAGAATTTATCTGTATCAAGTATACAAAAAGAAAGTATTTACATAGGTATccacaaaacatatatatataaacatattcagGAATAAATGGTTCCAGTTctcaaaaattacaaaattttttacaaatttctgagctcagaGTTTTGAATTGTAGTGTATACAAACAAAAAGTGAAGACGAAATTCTCATCCAATTTAAGTGACCTTTAAGTGGATTGTGACGGTGTTGAAATGATTTGCATATAAAAACGGACCTGCTCTGACGTGTGGATGCAAATGCGTGACGCAAACCACAGTTGTTTGGTTTTCCTAAGCGTGATGCTTTCAGCTGTCTCTTCGACAAGTCATTTACAAACGCAAGAGGAGTATAAATCAGATGTGGCGCTCTGAACATCGTGCGGCGGTGGACCCGACCGGCTCTGTTCATCATTATACTCTTGCTATCGACTTGATCCACTCTTGTCCTGGTGCGTCGATGCCTTCCTTCGGCCAGCAGCAGCACGCTCTCTCTGCTCCACAAGCTGTTCAGTGTTTAGTAAGGAGCTTAGGCATGCAGGGAAAGCATAAGTTGGAAATGTAAGAGAGTTAGCCGGTCGGTGTTTGTTTGTCCAGCTCCTCCTGCCAAACATCAAATCCGTCAATGCGTCTCTTTGTCAGAGCCtgcttttcctcttcctcttcctcttccctgctttctttctttcagtagTTCCTCTCCTGATTTTGCTTTCTCCGGTTCCTCCGTCTCTCTGCATGTTTGTGATTGGGACAGAGCTGCCACGGTTCATAGGAGGTGAACTCCTGCGTATCTTCTGAAAGGAAGAGCAGAAGCTAAATCACACAgaaaagaggaaagagaaaaaCTGTACCGGTGAAGATGAACGTTCTGGAGGCTTCAGGAGACCCGGAGGGAGAAGGCAGTGACGACTTAACAGGAAGGAAGAACTCCAGGTTAAAGTCTAAGTCACGCCTGTTTGGGAAGATAAGGAGGAAACAGGATGATTGTGGCATGAAGCAGAGTCAGTCTGCAAGTGATATAACACAGAGTGTGGAGGACTCAGATTGTTCCAAAGTCATGCTGGGATCCCGGGCATTTTCATATGACAGCATTTTTCATGCAGAGCGCAGTCATTCAGACCCTGAGCCTCTACGAATCCTGTCTCAAGAGAACATTCATGGCAAAATTCGAGCTCTGCAGATAAAACTCCAGCAGCAAAAGCTGCATTTAGGTCCTCCCCCACTTCTGATGCCCGTGAAACGGCGTGAAGACTTAGGTGGAAGTTCAGAAGATGACGGTCTTCCTCGTAGCCCCTCTGAAGTGTCCTGCGGAGAAGGACTATACATGAGCATATCGAACAAGGCTTCTTCACAGCCTCTTTCTCCTCGGCCGGTCAGCCCAGCACCCGCACCCCTTTCCCCTGGCTCAGTGGGCTTCAGCACTCCTCCACAATTCACTTCCCTCCTGGACAACTCTGCTGCCCGTCACCGTATGTCCCTCAAGCCTAAGAACCAAAGAGCCAGTGCCAAGAACAGGAGGGTGACCACTTCGGCTGGAAGCAGAGCACGATCTGAGAGTTGGAACAATCTGGACCGATCACTGACTACTAAAGAGCAAGAGACTCCTGTAAAAGAGATACCTCGAGCTCGCTCATATTCCTCACAGGTCTTACGGGGGGAGAGGCTTACGACTTCACTAATCAAGAATCCAGTTCCGGTTTCACCTTTAATGTCTCTGCAGACTTCTGGAGACAGTAGGCAAGTTTCTGTTGAACCTGAGTTTGAGAGAAACATCCTTTCCACATCGCCTCCAAGCCCTGGCTTACGAGAAACAAGTCCAGTAGCCAAACCACCGATCCCAGTGGTGCCAACTGACAAAAAGGGAAAAGGAGAAGTGAGTGAGATGCTCAGTAGCTCCAAACTACCCAAGAACAGCCAAAGTAACATTGTGTTAACTGTAAGACCAAGTGCACCTGCCACAACAGAATTGAGTCCCGTGAAAGATGAGAAGTCTAATACTGTGCTAATACAAACCAAGatggacaaaaacagttttcagAATGCAGTAAATATAGAGAAAAGCCCAGCCTCTACTCAGGCTCCAACCAATGTGATTTGTGGAGTAAGCTTGAGACCATCATCTCTGAGGAGAAATATACCTTCCACGGATGACAAACATGAGTACAGGACCCTTCAGCCAGGCAGCGCAGTGTCGGCTGTTAGTCATGAAGATCACGCTCAAACAGAATCCATAAAGCGCCAGAGGACTGTGTCTGGTTCGTTCCACTTCAGCGTCTCCTCAGACAGGAGTCAAGAGCGGCCGAGGACTGCAAGCTTCACTGGAGTAGTGGGACACGCTGGACTGAAAAAGGAACCTTCGTCTCCTGCCAAACCTCCTTTAAATTTCAAGACAGAGCGGCAAGTAAGTTCAGAAGTcgagaaaacaataaaagaccCATGTGCTAACTTACCACCAACTTCAAAGAAGGAAGACAAAAAGGACACTTCTCCTCGGGCCTCGGATGTGGAGGATAGTCAGGACGAGAAGCAGGAGATTGGGGTAGAGGCTACTGAAGGAGGACTACAGGAGGTGGAGGTGGCAGAAGAAGCAGTTGAGGATGTGATGGAAGATGTAACTgtgggaaaagagagagaggctacAAATGCATTCGGTGTGAAGCTTCGCTCTACCTCTCTTTCGCTAAGGTTTCGCTTGGACAAAGCTCCATCAGAAGACAGAGTAAAACACCACAGTGCATCAATTTCACCTCCAGCCTCACAGTCTGACTTAACCAGCTATGTGCAAACTGAAGACCAACACACTGCCATGGGGTTTACGAAAGTCCATGCTAAACTCAAAGAACCTCCTCTCCAAACGGACACGTCCTCAGTTCATTCCTCCGGTTCGCCACCTAAGAGTTTCTgtagagacaaagagagagctGGCGTCCTCAGACAGGCTGAACCTCATCTCTCATCATCAGCCAGCAAATCCACTAAGATTGTACCTTCACCATCTAAAGAAGGTACAGACTTGCCTCCAGAAGAGACTACAGCGGTATCCTCTCAAGAGAACCCACCAACATCTACTTCTTCAGAGGTGTCCTGGATGGACATGGCCAGAGAGAAGACCAGAAGCCTCCAGCAGCTCTTTACCAGTAGACTGCCCGAGTTTCCTAGCTTGCAATCTCGACCAACAACCTTGACCACAACACAGCCGCAAACCCAAACATCCACTTCTCAAGCCAATCCAAGAATCACACAGAACATTTCAAGCCAGTCGACGACTACGCAGCCTCTTTCGAGACCTACAGAAACAATACCGCTGCCATCTGCACAGCATTCTGGAAGATCCTCACAATCTGCCGCTCAGCCGATGCAGATCCAGACTcgaacaacaacaaaccaacCTCCAGCAATTTCAAATCAGACTCAAACTGACAGTACAAGAGAAGTCCAGTTTCAGTCCAACAGccaaatgtttaattcatcaaAACCAACCCAATCTACAGTTATCTCCGTATCGACTGTGCAATCCACTGCTGTGAACACAGCAAAACATCCATCACAAGCACTGGCACCACATACACCACCCTTCCAGCCGTCATCCCCGCTTCGAGCCGCATCACAGGCCCCCACACAAGCTATACAGCGTCCCACAGCACCCCCTGGTTACCAGTCAAGCCCAAAGTTAGCGTCCCAACAGTGTGGCGTAACGGTCTCAAAGGATCCGCCTGGGAATGAGGAAGGAGAGCCTGGCGTAATCTCAGGGAAAGCTGACCGAGCGCCTGCGTCTCAGGGGACCGGGCCTGAAGATGGCAGACCAGTGTGGGCAGCAGGATTAGGAAACAAGTCCTCCCTCTTACAGCGCTGGGAGAACCAAACTACTGCTGCAACCAAGACAGGTGAGCTGAAATCCACAGCAGAGTCTCAAGCCACATCTCAATCCACAGCTCCTCTCAGACCCACCTCAAAGCTCTCAGGCACAGGATTCGACTCAAGCTCGTCGATGCAAGCATTAGTGTCTCCTGTTCCCACGAGGTCAGCAGACAGAGAGGATAAATGGCAGCAGAAATCCGTGCCACCGTCATCACCTTCATCCTCACCTTCATCATCTCCTCTGCAGTCGGTCCGTGACACTGCCCAACCGTCCTGGATGGAGCTGGCCAAGAGGAAATCCCTGGCATGGAGTGACAAAACTatggactaaaaaaaaaaaaaagggatggAAAAAGAGTTTACAAGTGCAAGAAAGAAATGCGGTTGGATGCTAAGGTTGGAGGGCATTTTCAGGGTTGTGTTCCTGAAGCAGTCTGGTTTGCTTCACGTGAACTTCACTAGACTTTGAAGGTAAAGCAGCGCGTTCTGGAAGTGAACCACTATTGCGTGTGTATATTATTGAGGGAAAGTTGCACATTCATCAGTCAGTAAACCTCCTAATAGTGTTTAAAACCTCCTGTGAGCTGCTTGTATCTCCACACGCAGTATGAATGTACGCacagcagagaaagaaaaaggagaagTTAATATTGTGAGATTAAAGTCTTGTTCTCTTGCAACACTGGCTAGCAGCTGCTGGTAATGTAGTTTGCAAACGCACCACAGAACTGAGTGAGAAAGTAGATCTCGAAAGGGTACAGAAACAGATTCAGGTTGAGTCTCAATCAAAAGCACCCTGAGATCTGTGATctcaggaagaggaagagaaataGACGGCACCATACGCTTTCCCTGCTCCCCGACACACAAAACCAATAACTGTCTCCCAGGAAATACGTTTCTCAGGTTTAACACTTTGTAATGTTCGTGATTATTTCCCTTACaattagaaattatttatttgcatgaaaTCCATCCAagaatttgtatgtattttatcacCCGTTGATTTTCTGACACTTGTTAGATGTTAagatttctgttattttaatgttaaactaTGTGaccgtaataatatttcaaattactCAGAGCTTGCTTTTGAAGATACCGACTTCCTTCAATAAATTCATCTTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA downstream 46316 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA downstream 46316 7146440 ~ 7153954 (-) False LOC122351350
XR_006251860.1 lncRNA downstream 164909 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 304873 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 317294 6882585 ~ 6882976 (-) True G68357
TU101258 lncRNA upstream 116022 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 169483 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 603442 7815249 ~ 7818832 (-) True G68555
TU101355 lncRNA upstream 608201 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 1259056 8470863 ~ 8474578 (-) True LOC122352023
XM_043248369.1 mRNA downstream 249 7196115 ~ 7200021 (-) True creg2
XM_043248362.1 mRNA downstream 5759 7154979 ~ 7194511 (-) False mgat4a
XM_043248361.1 mRNA downstream 5760 7154979 ~ 7194510 (-) True mgat4a
XM_043248373.1 mRNA downstream 51639 7147155 ~ 7148631 (-) False LOC122351350
XM_043248360.1 mRNA downstream 82793 7106559 ~ 7117477 (-) True slc9a2
XM_043248372.1 mRNA upstream 3206 7215013 ~ 7218008 (-) False mitd1
XM_043248371.1 mRNA upstream 3206 7215013 ~ 7218008 (-) True mitd1
XM_043249467.1 mRNA upstream 36212 7248019 ~ 7256613 (-) True slc23a3
XM_043249469.1 mRNA upstream 47387 7259194 ~ 7268300 (-) False LOC122352006
XM_043249470.1 mRNA upstream 47387 7259194 ~ 7268300 (-) False LOC122352006
TU101110 other downstream 51650 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 939201 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1100387 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1156345 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1277450 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 802642 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 867329 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1129136 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2696381 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3221700 10433507 ~ 10441872 (-) False trim13

Expression Profile