RNA id: XM_043248358.1


Basic Information

Item Value
RNA id XM_043248358.1
length 5407
RNA type mRNA
GC content 0.47
exon number 23
gene id inpp4aa
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7117546 ~ 7142648 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGTGACCACTAGCAGGACTATGTTATACACTGACCACTGAATTTGACAATAATGCAGTGATGATAATCTCGGACATGTGAGAAAACCTACATAATTTAAACTATCACTTCTATATCAGTGCTTACTAAATAACTGTGATATTGACATAATCCTTCTTTACGGAAAGATAACGTTCGCTTCCGGTTTGTAGAACGTTATAATAACGTTGTTCTAACGTTaacttatttaattacttttaagtACAAAAGCCAGACAAATTACTTGAGATATATCATCTGGTCGATGTCTTGAGGTGTGGCAACTACAGTCTACAGTAGTACGGCTTTACTGAATGTAAATTTTGTTGAAGTGCTCTAGGCTGACGATACActgggcaactttttgagcagTCTGCTTGTGCACTTTTCAACTGACAATGACTAACAAATATCTATCCGGATAGTTAGTCTCACTTTGCTCAGGAAGTCGCCAAGTGCACCTTCGTCTCTAAACGCCGCATCCACTAGATGGCAGACAAGGTCTTCCGTTAGTGTACCTGTAAACCATGCGTCGAAAACATTTTCGTCAGGCGTCCTTTGATGCGAGCAAACGCGTTGAAGCGCTCGTGCCTCACGAGGACGCGCTTTATCCGGGGGGCCGGGGCGGGGCTTCGAGCAGCGGCGCTGACGTCACGCGCGCTGACGTCACCGCAGGGCGAGTCCAGAATGCAGCGCAAGGGGAAGAATTGCGGAGACCACCGAGTATCAAAACACCGATCCGCGTACCGCCTCAAGAACCATGGAGCGCATCGGTGACTGAAACCAGTTCTAACTTGgagactgaaaaaaaacctgtattaGTGGAAAACCTTTGCCGGCAACATAAAGTGGGAGCGTAAGAGTTAGTTGCATTGGTGACTGAAGTAACTGGAGCCAAGATGGCGGGAAGAGAGCGCAGTCCACGCCACAGGCCATGGTCTGTCTACCGAGCAAACACGTTTGATTTGTCCTCAGAGATGATGGGGTTGGCACTAacagGAAACAGTCAGGATCCTGATGAGCCGGTGCTTGAGTTCAGTCTGGCCTGCAGTGAGCTGGTCACTCCGTCACTGGACCGTAAGCCCAGTAGTTTTGTAGCAGTGAGCTGCACCACCCCTCCGCAGGCGTTCTGGACCAAACATGCGCAGACTGAAATTATAGAGGGCACCAGTAATCCAATCTTCTTGAGCAGCATTGCCTTCTTCCAGGACTCTCTGATTACCCAGCACACTCAAATCAAACTGTCTGTCTACGATGTGAAGGACCGCTCGCAGGGAACTATGTACCTGCTCGGTTCGGCTATATTTACAGTGAAGGAGCTGCTTCAGGACAAACACCACAGGCTACACCTCACTCTGCGATCAGCAGAGAGCGAGCGGATGGGTAACATCACCATCATCGCATGGCAGATAGAGGAGAGGAGAGACCAGCGAGCTCCTCTGGCACGGTCAGACACGGTTAATGGCAGGATGGTATTACCTGTTGATGAAAGTTTGACCGAATCCATGGGAGTTAAAGCAAAATCAGCGTCCCTATGTAAAGACCCTCTTTTAAAGGCAGTGTTTGGAGGCACTATTTCACGGATGTACCGGTTCCCCACGACTGATGGAAACCACCTGCGTGTCCTGGAGCAGATGGCAGAGAGTGTGCTCTCCCTGCACATACCAAGACAGTTCGTCAAACTACTGCTGGAGGAAGATGCTGCCAGGGTGTGTGAGTTAGAAGAGCTGGGGGAGTTGTCCCCCTGCTGGGAGAATCTGAGAAGACAGATCATCACTCAGTACCAGACTATCATCCTCACCTATCAGGAGACTCTCAGTAATTTACATGAATACAAGGGTCCCTCCTTCAAATCTAGCACTctgaaaggagagaaaaaactGGAGTTCATACCTACAAACCTCCACGTCCAAAGGATGAGAGTGCAGGGCGAGACCGGCTATGATCGCACATACGACGTGGTGACCACAGGGGCCCCTGCGGCACATTATCAGGGCTTCAAGGGCAGTGGGTTGAAGAAACTCATTCAGAAATTTGAGGAAGCCAAAAAGCATGCCGGGGAATCGGCTCCACCTTCTATGCGGTACCAGCCACAGGATGTGATGAAAGCTAAAGAAATCATTTCCCATATCAACACTCTGAAGACACAGGTCAGCTACTACACTGAGCGGCTCTCACGCGCGGCCAAAGAGCGCTCGACCAATGCGCTGGAGAGGACCCTAGCTATCCTCACGGACAAGacgCGGCAGCTGGTGACAGTGTGTGACAGTAAGCTGCTGACTACAGCTATCCAGGCACTGAGTGCTGCACGCCCAGAGTTCATTGCCTCCAGAGGCTCTCCGTCCGCCCATGACACTGAACGTGTGGTCCTGAGGAACGACCAGGGCTCTCCGCAGGCCAAATGGAGCGGGAAAGGGAACAGAGCGTCTGTCAACTTAAACTGGCAGGAGGAGGAGTGGGAAAAGATCTGGCTCAATGTGGATAAGAGTCTGGAGTGTGTGATCCGCTGCGTGGACAGGCTGCTGACGAGAGAGCGCTCTCAGAGCGACAGCAGTGAAGACGTCTTCCTGTCAGACCAGCAAGCTGACACCAGCAAGAGAGATGGCAGTCCCAGTGTTGAAGGCTCCTCTCCTGGTGAATGGAGTGAAGCTCTGTATCCTCTCCTGACCACTCTGAACGAGTGTGTAGCGATGATGAGCGACAAAGCCAAAAAGTCCATGGTTTTTCTCCTGATGCAAGACAGCGCTCCCACCATCGCCATGAGTTTATCGCTGCAGTACCGCAGAGATGTGGTTTTCTGTCAGACACTGACGTCCCTGATCTGTGGGTTTGTGATAAAGCTGAGGAACTGTCTAAGCGACGGCGGCTTCCTCAGACAGCTCCACACTATCGGCTTACTGGTCCAGTTTGAGGGGCTTCTGAGCACCTACGGGGAGGAACTCGCCATGTTGGAAGACATGAGTGTAGGCGTCATGGACCTCCGGAACGTCACCTTTAAAGTGACCCAGGCCACCTCCAGCTTCAGCCCGGACATGCTGCCTGTCATCACGGGCAACAGAGACGGGTTCAACGTGCGCGTTCCTTTACCGGCGGTGATGTTTGATGCGTTACCGCGGGAGATCCAAAACGGGATGCTGCTGCGAGTGCAACCGGTGTTATTCAATGTAGGAATCAACGAGCAACAAACTCTGGCGGAAAAGTTTGGAGACACGTCGCTGCAGGAAGTAGTGAATATGGAGAGTCTAACTCGCCTTACCTCCTATTACGAACAATTTAAGGAAGTGCTTCCTGAAGACTGTCTGCCCCGCTCTCGCAGTCAGAACTGTGTGCCTGAGCTACTCAAGTTCCTCGGTCAAAATGTGACTGCCAGGAAGAGCAAGAATGTGGACATCCTGTTGCAGGCAGCAGAGATATGTCGGCGTCTGAACGGTGTGCGTGTGACCAGCTGCAAGAGCGCGAAGGATCGTACGGCCATGTCGGTGACCCTGGAGCAGTGCCATATCCTCCAGCAAGAGCACTGCATGGCCCCGCAGGTCTTCACGCAGGCTTTGGACTGTATGAGGAGCGAGGGCTGCAGGCGAGAAAACACCATGAAAAACGTAGGCAGCCGCAAATACGCTTTCAACTCCCTCCAGCTCAAGACTTTCCCCAGACAGTACCGACCACCAGAGGGCACCTTCGGGAAAGTGGAAACTTGAACCGAAAGCAGTCCGCCGTTCTGGCCTGCCGCGACTAGAACTGCATGTTTCTCCTCGTTCGCTTTTACTTAAACACCACATATCCGAAGGAAAGTTTCATTATGCACAGTCATGCCGAAATACGCTCTGGTTATCATCCGGACGACTATCTTAAGTTTTCTACATCCCCAACCTCGGTGAAGAAAGGAGATAGGGAAAGAAAGTCACTGAAGATAAATAAGTTGCTCGGTTGTATATTGCACTGAAAGCAGGTAAGACGGCctaactcaaaaaaaaaagacattgatGATTTCATTCATCAGAAAATTTCCCAAACAGTCCTAAAGCATCTAATTCATTCCATCTATGTTTAGttaataagtacatttttcaaTACTTTCCAGCGCCGCACTTGGTGTTTGTACTAAAATACATAGGACAAATAAGTCCAGAACCGTCAGCGCCGAAGCAGAGCTGCGTTTTATCATCCATTAGATTGTATTTAAAGTTCAGTAGGTTAAAGGTGATCGTGTATGTGCTGTGATATAGTAGATGATTTGTTCGTAAGTCATCCAGTTTTAAGATTTGTGAGGAAAAGTCGAGCTGTTAAGTTAAAGAATCCACGCACCTCGGTGTTCACCCTCACTTCATTTAAAGTATACACGATACTAGCTGCCTTAAGAGAGTCCACCGTTGGTTAAGATGCATACGTAGATATTTCTAATCTGTGTATGACTATTTGTGATGTGGCagattatgctttatttatttacagtaagacTCTCTCTTTACGAAAGCGTTAGTGCTTTAATGCGGGCCTTTACCCTCCTGACTGTGCGTTGTACGGGTCGTAGAGTTTAAGAGGACGAGCTTCCTCATACCGTTGCCAAGCACAGCTAGTCTCTGTACAGCGAGCATACCGTGTGAATATACATTCTTTGTAAGGAAACGTGCGAGAAGACACTATTATGTTCATTGACTGTTTGTATGTTTTCACAGTTCGGTGTTTCTTTGTAGGACATTTATATTGGTTGGTATGACTATCGGTACTGATCTAACAAGGAGCACTGCTGCAACTGGTCCTGAAATGTGAAGAATATTTCCTgcagtcttttgtttttgtaaagcagAGGGATGCATTTAGACtatttattatactgtaatagTTGAATACTGAAAATCATGATAGGCGTCGCATCGTAAACGATTAAGACTGTTTCCACGTGTAATGATCAGAATTAATCTCtgcacaaataaatgcacaaatcgACCGAATTTCTGGTTTATATATTGCAGTTGAACAACTGAAAGCTTGTATTTGCAACCTGGGAGACGAGCATGGGTCTTAACCTCTGctgaaatcattattattattattattattattttaaaattctttaaaaaaaaaaaacagatgcacTGCATGGAAGGTAGGCTACAATTGTTATTTAAGTttacacttaattttaataaatgtacgTGTAATTATTTTACCACTTGGTAAAAAtcattctattttaatttttcatgtaAGAGTTTATCCTCTATTGTAAGTGCTAAAGCACTGCTATGTTGTAAGAGCATGCTGCCCTATTGATCTTACAgtgtctgattttattttttaatgtatattcaaATACTTTGCTGTACAAAATGCCTCTCTTCCCTCCAGACATAcagctttaaaattaaaatcacataCCAGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101024 lncRNA upstream 121693 6991833 ~ 6995856 (+) True G68309
TU101019 lncRNA upstream 142848 6963155 ~ 6974701 (+) True G68304
TU101009 lncRNA upstream 174228 6907738 ~ 6943321 (+) True G68296
TU100960 lncRNA upstream 409356 6707841 ~ 6708193 (+) True G68254
TU100958 lncRNA upstream 422638 6694678 ~ 6694911 (+) True G68252
TU101167 lncRNA downstream 56621 7199269 ~ 7199817 (+) True G68405
TU101162 lncRNA downstream 114032 7256680 ~ 7259394 (+) True G68401
TU101189 lncRNA downstream 119893 7262541 ~ 7263713 (+) True G68424
TU101158 lncRNA downstream 138119 7280767 ~ 7298285 (+) True G68397
TU101154 lncRNA downstream 155385 7298033 ~ 7301495 (+) False G68397
XM_043248363.1 mRNA upstream 11187 7100429 ~ 7106362 (+) True mfsd9
XM_043249412.1 mRNA upstream 153503 6956521 ~ 6964046 (+) False fhl2a
XM_043249413.1 mRNA upstream 153503 6957997 ~ 6964046 (+) True fhl2a
XM_043249411.1 mRNA upstream 153503 6958000 ~ 6964046 (+) False fhl2a
XM_043248631.1 mRNA upstream 237521 6842578 ~ 6880028 (+) True uxs1
XM_043248364.1 mRNA downstream 471 7143119 ~ 7153966 (+) True LOC122351345
XM_043248367.1 mRNA downstream 7283 7149931 ~ 7153764 (+) True LOC122351346
XM_043248365.1 mRNA downstream 7283 7149931 ~ 7153764 (+) False LOC122351346
XM_043248366.1 mRNA downstream 7283 7149931 ~ 7153764 (+) False LOC122351346
XM_043249572.1 mRNA downstream 98688 7241336 ~ 7247598 (+) True ihha
TU100736 other upstream 1152669 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1231796 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1660020 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1660286 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1660706 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1198650 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1288497 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1722001 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1999944 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1999944 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile